Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005358

Physical Location & Seq

Genomic Coordinates Forward (+)

64900374 .. 64901200

Gene Structure 827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGATAATAGGTCCTCATTCAATTATTGGAAATGCGGTTCGATTCAAACCCAATATATTGGACATGGACATAATGGAAAGAGTTCTTGAGGTGAATGCTGAGTTTAGAGATACTGGATTGAAAAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTTCAAGAAGCAAGGCCATGCCATACTAGAACCTTTTGCTCCTGGTGTAAACTATGCTCAGTATCTTAAGGAACTGTTGGAGAAGGATCATCAAGCATTTTTCTGCCACTTCTACAATATATACTTCGCTCATTCAGCTGGTGGACGAATGATTGGGAAAAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Heme_oxygenase

Protein Analysis

108

Amino Acids

12.35

Weight (kDa)

8.71

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69720 AT1G69720 AT1G69720 AT2G26670 AT2G26670
fragaria_vesca	FvH4_1g03240
malus_domestica	MD02G1031400.v1.1 MD15G1173000.v1.1
prunus_persica	Prupe.7G243300_v2.0.a1
pyrus_communis	pycom02g02620 pycom15g15460
rosa_chinensis	RchiOBHm_Chr2g0088381
rosa_laevigata	RLG00000005088 RLG00000015948
rosa_multiflora	Rmu_sc0000039.1_g000009 Rmu_sc0004235.1_g000005 Rmu_sc0013978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113580 Rroxscaffold_2G00113670 Rroxscaffold_2G00152710 Rroxscaffold_7G00191740
rosa_rugosa	Rorug01G0483700
rosa_samantha	Rh2AG038300 Rh2BG037600 Rh2CG038700 Rh2DG038300 Rh5BG543800 Rh5CG567200
rosa_wichuraiana	Rw2G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	249
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	4 cut(s)	21, 46, 121, 160
AjnI	CCWGG	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	182
BfrI	CTTAAG	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	90, 227
BseNI	ACTGG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	91, 226
BspPI	GGATC	1 cut(s)	249
BspTI	CTTAAG	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	99, 213
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	11
CviAII	CATG	2 cut(s)	64, 173
CviJI	RGCY	2 cut(s)	171, 293
CviKI_1	RGCY	2 cut(s)	171, 293
DdeI	CTNAG	2 cut(s)	99, 213
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	196
FaeI	CATG	2 cut(s)	67, 176
FaiI	YATR	9 cut(s)	56, 65, 71, 174, 179, 210, 275, 277, 322
FatI	CATG	2 cut(s)	63, 172
FspBI	CTAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	67, 176
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	205, 299
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	2 cut(s)	86, 160
Hpy8I	GTNNAC	2 cut(s)	205, 299
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	99, 213
Hsp92II	CATG	2 cut(s)	67, 176
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	99, 183, 210, 279
MaeI	CTAG	1 cut(s)	182
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MluCI	AATT	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	2 cut(s)	24, 82
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	67, 176
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	11
PspPPI	RGGWCCY	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	6 cut(s)	13, 93, 128, 190, 295, 321
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	86, 221
SmoI	CTYRAG	2 cut(s)	86, 221
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.