Rh5BG543800

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005358
Physical Location & Seq
Reverse (-)
86587298 .. 86591107
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG543800.1

Sequence Viewer

Length: 258 bp
ATGTTGTTATGTGGTCTTTTGGTTATAGATGCTGAGTTTAGAGATACGGGATTGAATAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTTCAAGGAGCAAGGCCATGCCATACCAGAACCTTCTGCTCCTGGTGTAACCTGTGCTGAGCATCTTAAGGAACTGTCGGAGAAGGATCCTCAAGCATTTCTCTGCCACTTCTACAATATATACTTTGCTCATTCAGCCGGTGGACGAATGATTGGGAAAAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

85

Amino Acids

9.52

Weight (kDa)

6.04

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 13 - 83 7.7e-06 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 170, 183
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 55, 94
AjnI CCWGG 1 cut(s) 130
AlwI GGATC 2 cut(s) 170, 183
AoxI GGCC 1 cut(s) 103
BamHI GGATCC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 132
BfrI CTTAAG 1 cut(s) 155
BlpI GCTNAGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 19, 160
Bpu1102I GCTNAGC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 227
BseBI CCWGG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 24, 138
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 228
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 2 cut(s) 25, 139
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 2 cut(s) 170, 183
BspTI CTTAAG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 155
BstDEI CTNAG 2 cut(s) 33, 147
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 227
CviAII CATG 1 cut(s) 107
CviJI RGCY 2 cut(s) 105, 227
CviKI_1 RGCY 2 cut(s) 105, 227
DdeI CTNAG 2 cut(s) 33, 147
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 110
FaiI YATR 7 cut(s) 10, 26, 108, 113, 209, 211, 256
FatI CATG 1 cut(s) 106
HaeIII GGCC 1 cut(s) 105
HapII CCGG 1 cut(s) 228
Hin1II CATG 1 cut(s) 110
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 64, 169
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 132, 166
HpyCH4III ACNGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 33, 147
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 97, 133
LpnPI CCDG 5 cut(s) 117, 129, 144, 154, 241
LweI GCATC 2 cut(s) 19, 160
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MflI RGATCY 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 1 cut(s) 189
MseI TTAA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 175
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 175
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 132
SetI ASST 4 cut(s) 62, 124, 143, 255
SfaNI GCATC 2 cut(s) 19, 160
SmlI CTYRAG 2 cut(s) 155, 180
SmoI CTYRAG 2 cut(s) 155, 180
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 165
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.