Rroxscaffold_2G00152710

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005358
Physical Location & Seq
Reverse (-)
89578218 .. 89580714
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152710.1

Sequence Viewer

Length: 849 bp
ATGGCTTCTTTAACCCCAATTTCGCAATCCCAGTCCCTTTTTAACAAGACCCAGTTCCCCACTAACCCCAATTTAGGGTCTGGATTTTTGCCCAAGAAATTCTCCCTTTCGTTTCCCAAGATGACTACTAGGTTTCCCATGAAGGCGGCTGCCGCCGGAGTTGTGTCGGCGACGACGGCGGAGATGCCGAAGAAGAGGTACCCCGGAGAGGCAAAAGGGTTTGTGGAGGAGATGAGGTTTGTGGCAATGAAGTTGCATACTAGGGACCAGGCTAGGGAGGGTGAGAAGGAGGTGAAGGAGCCTCAGGAGAGGCCGGTGGCCAAGTGGGACCCGACGCTTGATGGGTACTTGAGGTTTCTTGTGGATAGCAAGTTGGTGTTTGACACCCTTGAGGCGATTGTCGACAAGGCTCCCTTCCCTTCTTATGCTGAGTTTAGAGATACTGGATTGGAAAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTTCAAGGAGCAAGGCCATGCCATACCAGAGCCTTCTGCTCCTGGTGTAACCTATGCTGAGTATCTTAAGGAACTGTCAGAGAAGGATCCTCAAGCATTTCTCTGCCACTTCTACAATATATACTTTGCTCATTCAGCTGGTGGACGAATGATTGGGAAAAAGGTGGCTGAAATGATCCTCGACAAGAAAGATTTGGAATTCTATAAATGGGATGGTGAACTTTCCCAATTGTTGCAGAATGTGAGAGAGAAATTGAACAAAGTTGCAGAGGGCTGGACGAGGGAGGAGAAGAACCATTGCTTGGAAGAAACAGAGAAATCATTCAAACATTCAGGGGAAATTCTCCGTCTAATATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

7.03

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 113 - 276 4.2e-12 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 787
AccI GTMKAC 1 cut(s) 402
AciI CCGC 3 cut(s) 146, 153, 179
AclWI GGATC 3 cut(s) 566, 579, 655
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 3 cut(s) 98, 683, 825
AfaI GTAC 2 cut(s) 200, 347
AfiI CCNNNNNNNGG 5 cut(s) 74, 75, 208, 274, 787
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 3 cut(s) 490, 742, 811
AjnI CCWGG 2 cut(s) 267, 526
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
AluBI AGCT 1 cut(s) 623
AluI AGCT 1 cut(s) 623
AlwI GGATC 3 cut(s) 566, 579, 655
AoxI GGCC 3 cut(s) 311, 318, 499
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 3 cut(s) 98, 683, 825
Asp700I GAANNNNTTC 1 cut(s) 806
Asp718I GGTACC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 265, 328
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 293, 304, 713
AvaII GGWCC 2 cut(s) 265, 328
AxyI CCTNAGG 1 cut(s) 303
BalI TGGCCA 1 cut(s) 320
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 198
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 335, 692
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 2 cut(s) 269, 528
BcnI CCSGG 1 cut(s) 204
BfaI CTAG 3 cut(s) 129, 261, 273
BfrI CTTAAG 1 cut(s) 551
BisI GCNGC 3 cut(s) 147, 150, 153
BlsI GCNGC 3 cut(s) 148, 151, 154
Bme1390I CCNGG 3 cut(s) 204, 269, 528
Bme18I GGWCC 2 cut(s) 265, 328
BmgT120I GGNCC 2 cut(s) 265, 328
BmiI GGNNCC 7 cut(s) 200, 266, 300, 329, 330, 411, 573
BmrFI CCNGG 3 cut(s) 204, 269, 528
BmrI ACTGGG 2 cut(s) 25, 46
BmsI GCATC 1 cut(s) 174
BmuI ACTGGG 2 cut(s) 25, 46
BpuEI CTTGAG 3 cut(s) 370, 410, 561
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 75, 208, 274, 787
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 3 cut(s) 31, 52, 448
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 2 cut(s) 252, 781
BseBI CCWGG 2 cut(s) 269, 528
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 1 cut(s) 703
BseLI CCNNNNNNNGG 5 cut(s) 74, 75, 208, 274, 787
BseMI GCAATG 2 cut(s) 252, 781
BseMII CTCAG 3 cut(s) 317, 420, 534
BseNI ACTGG 3 cut(s) 31, 52, 448
BseRI GAGGAG 2 cut(s) 242, 785
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 3 cut(s) 313, 320, 501
BshNI GGYRCC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 156, 204, 314
BslFI GGGAC 3 cut(s) 19, 278, 341
BslI CCNNNNNNNGG 5 cut(s) 74, 75, 208, 274, 787
BsmFI GGGAC 3 cut(s) 19, 278, 341
BsnI GGCC 3 cut(s) 313, 320, 501
Bsp143I GATC 2 cut(s) 571, 660
BspACI CCGC 3 cut(s) 146, 153, 179
BspANI GGCC 3 cut(s) 313, 320, 501
BspCNI CTCAG 3 cut(s) 316, 421, 535
BspHI TCATGA 1 cut(s) 845
BspLI GGNNCC 7 cut(s) 200, 266, 300, 329, 330, 411, 573
BspPI GGATC 3 cut(s) 566, 579, 655
BspT107I GGYRCC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 551
BsrDI GCAATG 2 cut(s) 252, 781
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 3 cut(s) 31, 52, 448
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 2 cut(s) 571, 660
Bst2UI CCWGG 2 cut(s) 269, 528
Bst4CI ACNGT 1 cut(s) 561
Bst6I CTCTTC 1 cut(s) 188
BstAFI CTTAAG 1 cut(s) 551
BstDEI CTNAG 3 cut(s) 303, 429, 543
BstF5I GGATG 1 cut(s) 703
BstKTI GATC 2 cut(s) 574, 663
BstMBI GATC 2 cut(s) 571, 660
BstMWI GCNNNNNNNGC 3 cut(s) 152, 176, 620
BstNI CCWGG 2 cut(s) 269, 528
BstSCI CCNGG 3 cut(s) 202, 267, 526
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 3 cut(s) 313, 320, 501
BtsCI GGATG 1 cut(s) 703
CciI TCATGA 1 cut(s) 845
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 265, 328
CseI GACGC 1 cut(s) 343
Csp6I GTAC 2 cut(s) 199, 346
CviAII CATG 3 cut(s) 139, 503, 846
CviQI GTAC 2 cut(s) 199, 346
DdeI CTNAG 3 cut(s) 303, 429, 543
DpnI GATC 2 cut(s) 573, 662
DpnII GATC 2 cut(s) 571, 660
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 265, 328
Eco81I CCTNAGG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 267, 526
FaeI CATG 3 cut(s) 142, 506, 849
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 3 cut(s) 19, 278, 341
FatI CATG 3 cut(s) 138, 502, 845
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 147, 150, 153
FokI GGATG 1 cut(s) 710
Fsp4HI GCNGC 3 cut(s) 147, 150, 153
FspBI CTAG 3 cut(s) 129, 261, 273
GluI GCNGC 3 cut(s) 147, 150, 153
HaeIII GGCC 3 cut(s) 313, 320, 501
HapII CCGG 3 cut(s) 156, 204, 314
HgaI GACGC 1 cut(s) 343
Hin1II CATG 3 cut(s) 142, 506, 849
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HpaII CCGG 3 cut(s) 156, 204, 314
HphI GGTGA 3 cut(s) 293, 304, 713
Hpy166II GTNNAC 3 cut(s) 403, 629, 704
Hpy188I TCNGA 2 cut(s) 460, 565
Hpy188III TCNNGA 3 cut(s) 81, 305, 846
Hpy8I GTNNAC 3 cut(s) 403, 629, 704
Hpy99I CGWCG 3 cut(s) 175, 178, 337
HpyAV CCTTC 7 cut(s) 136, 280, 289, 424, 429, 528, 562
HpyCH4III ACNGT 1 cut(s) 561
HpyCH4V TGCA 3 cut(s) 256, 721, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 176, 620
HpyF3I CTNAG 3 cut(s) 303, 429, 543
Hsp92II CATG 3 cut(s) 142, 506, 849
KflI GGGWCCC 1 cut(s) 328
KpnI GGTACC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 571, 660
LmnI GCTCC 4 cut(s) 298, 415, 493, 529
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 174
MaeI CTAG 3 cut(s) 129, 261, 273
MaeIII GTNAC 1 cut(s) 532
MalI GATC 2 cut(s) 573, 662
MboI GATC 2 cut(s) 571, 660
MboII GAAGA 4 cut(s) 202, 205, 787, 803
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 7 cut(s) 18, 70, 98, 683, 713, 737, 825
MluNI TGGCCA 1 cut(s) 320
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 806
MscI TGGCCA 1 cut(s) 320
MseI TTAA 3 cut(s) 11, 42, 552
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 551
MspI CCGG 3 cut(s) 156, 204, 314
MspR9I CCNGG 3 cut(s) 204, 269, 528
MunI CAATTG 1 cut(s) 713
MvaI CCWGG 2 cut(s) 269, 528
MwoI GCNNNNNNNGC 3 cut(s) 152, 176, 620
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 571, 660
NlaIII CATG 3 cut(s) 142, 506, 849
NlaIV GGNNCC 7 cut(s) 200, 266, 300, 329, 330, 411, 573
PagI TCATGA 1 cut(s) 845
PdmI GAANNNNTTC 1 cut(s) 806
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 3 cut(s) 148, 151, 154
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 267, 526
PspGI CCWGG 2 cut(s) 267, 526
PspN4I GGNNCC 7 cut(s) 200, 266, 300, 329, 330, 411, 573
PspPI GGNCC 2 cut(s) 265, 328
PspPPI RGGWCCY 1 cut(s) 328
PsuI RGATCY 1 cut(s) 571
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 2 cut(s) 200, 347
RsaNI GTAC 2 cut(s) 199, 346
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 11, 42, 552
SatI GCNGC 3 cut(s) 147, 150, 153
Sau3AI GATC 2 cut(s) 571, 660
Sau96I GGNCC 2 cut(s) 265, 328
ScrFI CCNGG 3 cut(s) 204, 269, 528
SetI ASST 9 cut(s) 134, 200, 239, 294, 356, 458, 539, 625, 651
SfaNI GCATC 1 cut(s) 174
SinI GGWCC 2 cut(s) 265, 328
SmlI CTYRAG 4 cut(s) 349, 389, 551, 576
SmoI CTYRAG 4 cut(s) 349, 389, 551, 576
Sse9I AATT 7 cut(s) 18, 70, 98, 683, 713, 737, 825
SsiI CCGC 3 cut(s) 146, 153, 179
SspI AATATT 1 cut(s) 840
SspMI CTAG 3 cut(s) 129, 261, 273
StyD4I CCNGG 3 cut(s) 202, 267, 526
TaaI ACNGT 1 cut(s) 561
TaqI TCGA 2 cut(s) 402, 666
TasI AATT 7 cut(s) 18, 70, 98, 683, 713, 737, 825
TauI GCSGC 2 cut(s) 149, 155
Tru1I TTAA 3 cut(s) 11, 42, 552
Tru9I TTAA 3 cut(s) 11, 42, 552
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 155, 263
TspGWI ACGGA 1 cut(s) 821
Van91I CCANNNNNTGG 1 cut(s) 787
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 265, 328
XapI RAATTY 3 cut(s) 98, 683, 825
XmiI GTMKAC 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 3 cut(s) 129, 261, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.