Rroxscaffold_2G00113580

Heme oxygenase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005358
Physical Location & Seq
Reverse (-)
39259668 .. 39267847
8180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113580.1

Sequence Viewer

Length: 699 bp
ATGTCGGGCCTGGCACGGCAATGGGCCAATATTCCTAGGCCCAACCCGATCCCATATTCTAAAGTGCTCAGGTCGTGCCGGACCACTAACGGGCTTGGGTCATGCCTAGCCGCTTTTAAGCGTGCGAGGCCCGTGCTGTGCTCGTGCTTAGCGGCCCGTTTGCCACCTCTTTTTATAATGGAGAGTGGGTGCTATCCTAACCGACAGCGGCATAGAGGTGCTGTATTGGACGCTGGATCGTTTGGTGGTAGGGATCATGGAGGCACGGGCCAAGGCAGTGAGGGTCGAGACAGCTCAAGTCATTCTGCATGGTTGGGGGAGGCTCTAGCTGTTGTACTAAAACATCTTCTTGTTTGTCTAGATGACAGTGGAATGATATGTAATAGTTATTCTGACTTTTGTTGGCAAAAGATTTGGAGTGGTTCAAGGAGCAAGTCCATGCCATACCAGAACCTTTTTGCTCCTGGTGTAAACTATGCTCGGTATCTTAAGGAACTATCGGAGAAGGATCGTCAAGCATTTTTCTGCCACTTCTACAATATATACTTCGCTCATTCAGCTGGTGGACGAATGATTGGGAAAAAGGTTGTTCGAACACCTACTATCAATGGAAATCCTAAAAGTATATGGGATACTCATGATAGCCTTGCTGCAAGAATTTGCAGGTTTGTAGGAAAAGGAGATCCTAAAGTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 map00860 map01100 map01110
Pfam Domains
Protein Families
Heme_oxygenase

Protein Analysis

232

Amino Acids

25.62

Weight (kDa)

9.62

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 654
AciI CCGC 3 cut(s) 111, 152, 208
AclWI GGATC 5 cut(s) 43, 244, 261, 516, 677
AcsI RAATTY 1 cut(s) 657
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 90
AflII CTTAAG 1 cut(s) 488
AgsI TTSAA 1 cut(s) 426
AjnI CCWGG 2 cut(s) 9, 463
AluBI AGCT 3 cut(s) 294, 329, 560
AluI AGCT 3 cut(s) 294, 329, 560
Alw21I GWGCWC 2 cut(s) 69, 143
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 5 cut(s) 43, 244, 261, 516, 677
AoxI GGCC 6 cut(s) 7, 24, 38, 128, 153, 268
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 1 cut(s) 657
AspA2I CCTAGG 1 cut(s) 35
AspS9I GGNCC 7 cut(s) 7, 24, 39, 81, 129, 154, 268
AsuII TTCGAA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 81
AvrII CCTAGG 1 cut(s) 35
BauI CACGAG 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 69, 143
BbvI GCAGC 1 cut(s) 637
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 11, 465
BciVI GTATCC 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 4 cut(s) 36, 107, 326, 359
BfrI CTTAAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 654
BfuI GTATCC 1 cut(s) 625
BisI GCNGC 4 cut(s) 111, 153, 209, 651
BlnI CCTAGG 1 cut(s) 35
BlpI GCTNAGC 1 cut(s) 148
BlsI GCNGC 4 cut(s) 112, 154, 210, 652
Bme1390I CCNGG 2 cut(s) 11, 465
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 7 cut(s) 7, 24, 39, 81, 129, 154, 268
BmrFI CCNGG 2 cut(s) 11, 465
Bpu10I CCTNAGC 1 cut(s) 68
Bpu1102I GCTNAGC 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 35, 271
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 26
BseBI CCWGG 2 cut(s) 11, 465
BseDI CCNNGG 2 cut(s) 35, 271
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 637
BshFI GGCC 6 cut(s) 9, 26, 40, 130, 155, 270
BsiHKAI GWGCWC 2 cut(s) 69, 143
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 6 cut(s) 9, 26, 40, 130, 155, 270
Bsp119I TTCGAA 1 cut(s) 592
Bsp1286I GDGCHC 2 cut(s) 69, 143
Bsp143I GATC 5 cut(s) 48, 236, 253, 508, 682
Bsp1720I GCTNAGC 1 cut(s) 148
BspACI CCGC 3 cut(s) 111, 152, 208
BspANI GGCC 6 cut(s) 9, 26, 40, 130, 155, 270
BspCNI CTCAG 1 cut(s) 81
BspHI TCATGA 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 654
BspPI GGATC 5 cut(s) 43, 244, 261, 516, 677
BspT104I TTCGAA 1 cut(s) 592
BspTI CTTAAG 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 35, 271
BssMI GATC 5 cut(s) 48, 236, 253, 508, 682
BssSI CACGAG 1 cut(s) 142
BssT1I CCWWGG 2 cut(s) 35, 271
Bst2BI CACGAG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 11, 465
Bst4CI ACNGT 1 cut(s) 368
BstAFI CTTAAG 1 cut(s) 488
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 68, 148
BstKTI GATC 5 cut(s) 51, 239, 256, 511, 685
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 5 cut(s) 48, 236, 253, 508, 682
BstMWI GCNNNNNNNGC 2 cut(s) 127, 557
BstNI CCWGG 2 cut(s) 11, 465
BstSCI CCNGG 2 cut(s) 9, 463
BstV1I GCAGC 1 cut(s) 637
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 6 cut(s) 9, 26, 40, 130, 155, 270
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 2 cut(s) 283, 373
BveI ACCTGC 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 123
CciI TCATGA 1 cut(s) 637
Cfr13I GGNCC 7 cut(s) 7, 24, 39, 81, 129, 154, 268
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 335
CviAII CATG 5 cut(s) 102, 257, 309, 439, 638
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 2 cut(s) 68, 148
DpnI GATC 5 cut(s) 50, 238, 255, 510, 684
DpnII GATC 5 cut(s) 48, 236, 253, 508, 682
Eco130I CCWWGG 2 cut(s) 35, 271
Eco47I GGWCC 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 9, 463
EcoT14I CCWWGG 2 cut(s) 35, 271
ErhI CCWWGG 2 cut(s) 35, 271
FaeI CATG 5 cut(s) 105, 260, 312, 442, 641
FatI CATG 5 cut(s) 101, 256, 308, 438, 637
Fnu4HI GCNGC 4 cut(s) 111, 153, 209, 651
Fsp4HI GCNGC 4 cut(s) 111, 153, 209, 651
FspBI CTAG 4 cut(s) 36, 107, 326, 359
GluI GCNGC 4 cut(s) 111, 153, 209, 651
HaeIII GGCC 6 cut(s) 9, 26, 40, 130, 155, 270
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 239
Hin1II CATG 5 cut(s) 105, 260, 312, 442, 641
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 472, 566
Hpy188I TCNGA 2 cut(s) 394, 502
Hpy188III TCNNGA 3 cut(s) 287, 359, 638
Hpy8I GTNNAC 2 cut(s) 472, 566
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 308, 653, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 557
HpyF3I CTNAG 2 cut(s) 68, 148
Hsp92II CATG 5 cut(s) 105, 260, 312, 442, 641
Kzo9I GATC 5 cut(s) 48, 236, 253, 508, 682
LmnI GCTCC 2 cut(s) 429, 466
LpnPI CCDG 9 cut(s) 23, 55, 92, 219, 450, 461, 477, 546, 649
Lsp1109I GCAGC 1 cut(s) 637
MaeI CTAG 4 cut(s) 36, 107, 326, 359
MalI GATC 5 cut(s) 50, 238, 255, 510, 684
MboI GATC 5 cut(s) 48, 236, 253, 508, 682
MboII GAAGA 1 cut(s) 338
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 2 cut(s) 69, 143
MluCI AATT 1 cut(s) 657
MnlI CCTC 6 cut(s) 120, 177, 209, 254, 274, 313
MseI TTAA 2 cut(s) 117, 489
MslI CAYNNNNRTG 2 cut(s) 19, 216
MspA1I CMGCKG 2 cut(s) 208, 560
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 11, 465
MvaI CCWGG 2 cut(s) 11, 465
MwoI GCNNNNNNNGC 2 cut(s) 127, 557
NdeII GATC 5 cut(s) 48, 236, 253, 508, 682
NlaIII CATG 5 cut(s) 105, 260, 312, 442, 641
NspV TTCGAA 1 cut(s) 592
PagI TCATGA 1 cut(s) 637
PkrI GCNGC 4 cut(s) 112, 154, 210, 652
PsiI TTATAA 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 9, 463
PspGI CCWGG 2 cut(s) 9, 463
PspPI GGNCC 7 cut(s) 7, 24, 39, 81, 129, 154, 268
PsuI RGATCY 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 2 cut(s) 19, 216
SaqAI TTAA 2 cut(s) 117, 489
SatI GCNGC 4 cut(s) 111, 153, 209, 651
Sau3AI GATC 5 cut(s) 48, 236, 253, 508, 682
Sau96I GGNCC 7 cut(s) 7, 24, 39, 81, 129, 154, 268
ScrFI CCNGG 2 cut(s) 11, 465
SduI GDGCHC 2 cut(s) 69, 143
SfuI TTCGAA 1 cut(s) 592
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 2 cut(s) 19, 216
SmlI CTYRAG 2 cut(s) 295, 488
SmoI CTYRAG 2 cut(s) 295, 488
Sse9I AATT 1 cut(s) 657
SsiI CCGC 3 cut(s) 111, 152, 208
SspI AATATT 1 cut(s) 31
SspMI CTAG 4 cut(s) 36, 107, 326, 359
StyD4I CCNGG 2 cut(s) 9, 463
StyI CCWWGG 2 cut(s) 35, 271
TaaI ACNGT 1 cut(s) 368
TaqI TCGA 2 cut(s) 286, 592
TasI AATT 1 cut(s) 657
TatI WGTACW 1 cut(s) 334
TauI GCSGC 3 cut(s) 113, 155, 211
Tru1I TTAA 2 cut(s) 117, 489
Tru9I TTAA 2 cut(s) 117, 489
TscAI CASTG 2 cut(s) 283, 373
TseI GCWGC 1 cut(s) 650
TspRI CASTG 2 cut(s) 283, 373
Vha464I CTTAAG 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 1 cut(s) 657
XbaI TCTAGA 1 cut(s) 358
XmaJI CCTAGG 1 cut(s) 35
XspI CTAG 4 cut(s) 36, 107, 326, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.