Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005358

Physical Location & Seq

Genomic Coordinates Reverse (-)

80295130 .. 80297963

Gene Structure 2834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG567200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAATTATATTTCCAATATTTGTATGATGCTGAGTTTAGAGATACGGGATTGAATAGGTCTGAAAAGTTGGCAAAAGATTTGGAGTGGTTCAAGGAGCAAGGCCATGCCATACCAGAACCTTCTGCTCCTGGTGTAACCTGTGCTGAGCATCTTAAGGAACTGTCGGAGAAGGATCCTCAAGCATTTCTCTGCCACTTCTACAATATATACTTTGCTCATTCAGCCGGTGGACGAATGATTGGGAAAAAGGCGGATGAAATGATTCTCGAAAAAAAAAAAGATTTGGAATTCTATAAATGCATGGTGAACTTTCCCAATTGTTGCAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004392 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006787 GO:0006788 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009648 GO:0009791 GO:0009812 GO:0009813 GO:0009888 GO:0009987 GO:0010019 GO:0010024 GO:0010073 GO:0010075 GO:0010119 GO:0010225 GO:0010228 GO:0010229 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016491 GO:0016705 GO:0018130 GO:0019438 GO:0019439 GO:0020037 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0033015 GO:0034641 GO:0034644 GO:0040008 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046700 GO:0046906 GO:0048037 GO:0048367 GO:0048507 GO:0048509 GO:0048573 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0051202 GO:0051716 GO:0055114 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071494 GO:0071704 GO:0090567 GO:0097159 GO:0104004 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Heme_oxygenase

Protein Analysis

111

Amino Acids

13.0

Weight (kDa)

6.41

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Heme_oxygenase	PF01126	14 - 100	2.1e-07	Heme oxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69720 AT1G69720 AT1G69720 AT2G26670 AT2G26670
fragaria_vesca	FvH4_1g03240
malus_domestica	MD02G1031400.v1.1 MD15G1173000.v1.1
prunus_persica	Prupe.7G243300_v2.0.a1
pyrus_communis	pycom02g02620 pycom15g15460
rosa_chinensis	RchiOBHm_Chr2g0088381
rosa_laevigata	RLG00000005088 RLG00000015948
rosa_multiflora	Rmu_sc0000039.1_g000009 Rmu_sc0004235.1_g000005 Rmu_sc0013978.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113580 Rroxscaffold_2G00113670 Rroxscaffold_2G00152710 Rroxscaffold_7G00191740
rosa_rugosa	Rorug01G0483700
rosa_samantha	Rh2AG038300 Rh2BG037600 Rh2CG038700 Rh2DG038300 Rh5BG543800 Rh5CG567200
rosa_wichuraiana	Rw2G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	2 cut(s)	170, 183
AcsI	RAATTY	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	55, 94
AjnI	CCWGG	1 cut(s)	130
AlwI	GGATC	2 cut(s)	170, 183
AoxI	GGCC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	319
BamHI	GGATCC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	155
BlpI	GCTNAGC	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	19, 160
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	24, 138
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	228
BsnI	GGCC	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	175
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	25, 139
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	170, 183
BspTI	CTTAAG	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	165
BstAFI	CTTAAG	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	33, 147
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	227
CviAII	CATG	2 cut(s)	107, 304
CviJI	RGCY	2 cut(s)	105, 227
CviKI_1	RGCY	2 cut(s)	105, 227
DdeI	CTNAG	2 cut(s)	33, 147
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	305
FaeI	CATG	2 cut(s)	110, 307
FaiI	YATR	8 cut(s)	10, 27, 108, 113, 209, 211, 297, 305
FatI	CATG	2 cut(s)	106, 303
FokI	GGATG	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	2 cut(s)	110, 307
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	233, 310
Hpy188I	TCNGA	2 cut(s)	64, 169
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	2 cut(s)	233, 310
HpyAV	CCTTC	2 cut(s)	132, 166
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	303, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	33, 147
Hsp92II	CATG	2 cut(s)	110, 307
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	97, 133
LpnPI	CCDG	5 cut(s)	117, 129, 144, 154, 241
LweI	GCATC	2 cut(s)	19, 160
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MfeI	CAATTG	1 cut(s)	319
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	3 cut(s)	5, 290, 319
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	110, 307
NlaIV	GGNNCC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	3 cut(s)	62, 124, 143
SfaNI	GCATC	2 cut(s)	19, 160
SmlI	CTYRAG	2 cut(s)	155, 180
SmoI	CTYRAG	2 cut(s)	155, 180
Sse9I	AATT	3 cut(s)	5, 290, 319
SsiI	CCGC	1 cut(s)	254
SspI	AATATT	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	270
TasI	AATT	3 cut(s)	5, 290, 319
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	17, 273
Vha464I	CTTAAG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.