AT1G71950

Subtilisin-like protease

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
27080184 .. 27081641
1458 bp
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UTR
Exon/CDS
Intron
AT1G71950.1

Sequence Viewer

Length: 411 bp
ATGCAAACATTTGCTCCTGGAACAAGAGTCTACCACCTCATCATCATCGTCTTCTTCTTCTTCTTCTGCTTATCATCGTTCTTCGCTTCAATCGTCATGGCTGATGAATATACCGGAGAAGCAACGGGATCGTCGGAAGCAAAGGTTCACATCATCTACACCGAGAAACCTACCGATGAAGAACCTAAAACCTATCATCTCCGTACCCTTTCCTCTGCTCTCGGCAGTGAGGAAGCTGCAAAAGATGCTTTGATTTACAGTTACAAGGAAGCTGCTTCTGGTTTTTCAGCTAAGCTCACTCCTGAGCAAGTCGCTGAGATATCAAAACAACCAGGTGTGATTCAAGTTGTGCCAAGCCAGACTTATCAGCTGCACAAACCTGGTGGTGGTGGTGGTTTCAAGTTGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.85

Weight (kDa)

5.76

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 50 - 125 6.6e-17 Peptidase inhibitor I9
MORF_dom PF21864 55 - 124 6.5e-08 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AclWI GGATC 1 cut(s) 136
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 3 cut(s) 90, 344, 400
AjnI CCWGG 3 cut(s) 16, 331, 379
AluBI AGCT 5 cut(s) 236, 272, 290, 295, 370
AluI AGCT 5 cut(s) 236, 272, 290, 295, 370
AlwI GGATC 1 cut(s) 136
ApeKI GCWGC 3 cut(s) 236, 272, 370
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 3 cut(s) 223, 259, 357
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 3 cut(s) 18, 333, 381
BisI GCNGC 3 cut(s) 237, 273, 371
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 238, 274, 372
Bme1390I CCNGG 3 cut(s) 18, 333, 381
BmrFI CCNGG 3 cut(s) 18, 333, 381
BmsI GCATC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 303
Bpu1102I GCTNAGC 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 113
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 386
BseBI CCWGG 3 cut(s) 18, 333, 381
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 294, 306
BseXI GCAGC 3 cut(s) 223, 259, 357
BsgI GTGCAG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 386
Bsp143I GATC 1 cut(s) 128
Bsp1720I GCTNAGC 1 cut(s) 291
BspCNI CTCAG 2 cut(s) 295, 307
BspPI GGATC 1 cut(s) 136
BssMI GATC 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 18, 333, 381
Bst4CI ACNGT 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 291, 303, 315
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 3 cut(s) 18, 333, 381
BstSCI CCNGG 3 cut(s) 16, 331, 379
BstV1I GCAGC 3 cut(s) 223, 259, 357
BstV2I GAAGAC 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
CsiI ACCWGGT 2 cut(s) 331, 379
Csp6I GTAC 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 1 cut(s) 97
CviJI RGCY 7 cut(s) 101, 236, 272, 290, 295, 357, 370
CviKI_1 RGCY 7 cut(s) 101, 236, 272, 290, 295, 357, 370
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 3 cut(s) 291, 303, 315
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eco32I GATATC 1 cut(s) 321
EcoRII CCWGG 3 cut(s) 16, 331, 379
EcoRV GATATC 1 cut(s) 321
FaeI CATG 1 cut(s) 100
FaiI YATR 2 cut(s) 98, 111
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FatI CATG 1 cut(s) 96
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 237, 273, 371
Fsp4HI GCNGC 3 cut(s) 237, 273, 371
GluI GCNGC 3 cut(s) 237, 273, 371
HapII CCGG 1 cut(s) 114
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 2 cut(s) 27, 340
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 3 cut(s) 31, 148, 405
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 3 cut(s) 31, 148, 405
Hpy99I CGWCG 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 3 cut(s) 4, 239, 373
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 291, 303, 315
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 3 cut(s) 223, 259, 357
LweI GCATC 1 cut(s) 235
MabI ACCWGGT 2 cut(s) 331, 379
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 7 cut(s) 43, 46, 49, 52, 55, 73, 191
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 47, 223, 223
MspA1I CMGCKG 1 cut(s) 370
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 3 cut(s) 18, 333, 381
MvaI CCWGG 3 cut(s) 18, 333, 381
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 128
NlaIII CATG 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 340
PfoI TCCNGGA 1 cut(s) 16
PkrI GCNGC 3 cut(s) 238, 274, 372
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 3 cut(s) 16, 331, 379
PspGI CCWGG 3 cut(s) 16, 331, 379
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SatI GCNGC 3 cut(s) 237, 273, 371
Sau3AI GATC 1 cut(s) 128
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 3 cut(s) 18, 333, 381
SexAI ACCWGGT 2 cut(s) 331, 379
SfaNI GCATC 1 cut(s) 235
StyD4I CCNGG 3 cut(s) 16, 331, 379
TaaI ACNGT 1 cut(s) 260
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 1 cut(s) 232
TseI GCWGC 3 cut(s) 236, 272, 370
TspDTI ATGAA 2 cut(s) 120, 192
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.