Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Forward (+)

6397199 .. 6399943

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1048200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTAAGCATCACCAAGACTTTACTGTCTTCAATTTTGCTTTTGAATCTCATCATCTTCTCTGTGTTCGCCATGGCCGACCAATCTGCTCCGGAATCCGCCGCCGCTTCCTCCGAAACGGCGGTCCACATCGTTTACACCGAGCGCCCTCTCGAAAATGAAGAGCCCGAGTCCTATCACATCCGAACCCTAGCCTCCGTCCTCGGCAGTGAGGAGGCTGCGAAGGAGGCGCTGGTGTACAGTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCCTCAGCAGGTCGAACAAATTTCAAAGCTACCTGGGGTTCTTCAGGTTGTACCAAGCAGGACACTCCAGCTGCATTCAGGACCTGGAAAGCTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

127

Amino Acids

13.53

Weight (kDa)

5.55

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	43 - 119	4.8e-17	Peptidase inhibitor I9
MORF_dom	PF21864	53 - 117	9e-10	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
Acc36I	ACCTGC	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	91
AciI	CCGC	4 cut(s)	99, 102, 105, 122
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	239, 333
AgsI	TTSAA	3 cut(s)	33, 46, 306
AjnI	CCWGG	2 cut(s)	313, 364
AluBI	AGCT	4 cut(s)	277, 310, 352, 373
AluI	AGCT	4 cut(s)	277, 310, 352, 373
AlwNI	CAGNNNCTG	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	4 cut(s)	218, 254, 352, 373
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	2 cut(s)	147, 232
AspS9I	GGNCC	2 cut(s)	124, 362
AsuHPI	GGTGA	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	124, 362
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	205, 241, 339, 360
BceAI	ACGGC	2 cut(s)	135, 267
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	315, 366
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	2 cut(s)	148, 233
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	6 cut(s)	102, 105, 219, 255, 353, 374
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	6 cut(s)	103, 106, 220, 256, 354, 375
Bme1390I	CCNGG	2 cut(s)	315, 366
Bme18I	GGWCC	2 cut(s)	124, 362
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	124, 362
BmrFI	CCNGG	2 cut(s)	315, 366
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	72, 202, 314
BsaWI	WCCGGW	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	315, 366
BseDI	CCNNGG	3 cut(s)	72, 202, 314
BseGI	GGATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	227, 273
BseXI	GCAGC	4 cut(s)	205, 241, 339, 360
BshFI	GGCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	237
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	4 cut(s)	99, 102, 105, 122
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	298
BspEI	TCCGGA	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	280
BspQI	GCTCTTC	1 cut(s)	156
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	72, 202, 314
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	315, 366
Bst4CI	ACNGT	2 cut(s)	27, 242
Bst6I	CTCTTC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	273, 285
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	2 cut(s)	148, 233
BstHHI	GCGC	2 cut(s)	147, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	2 cut(s)	315, 366
BstSCI	CCNGG	2 cut(s)	313, 364
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	4 cut(s)	205, 241, 339, 360
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	214, 265
BveI	ACCTGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	2 cut(s)	147, 232
Cfr13I	GGNCC	2 cut(s)	124, 362
Csp6I	GTAC	2 cut(s)	238, 332
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	9 cut(s)	77, 166, 194, 218, 254, 277, 310, 352, 373
CviKI_1	RGCY	9 cut(s)	77, 166, 194, 218, 254, 277, 310, 352, 373
CviQI	GTAC	2 cut(s)	238, 332
DdeI	CTNAG	2 cut(s)	273, 285
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	2 cut(s)	124, 362
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	313, 364
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	76
FaiI	YATR	1 cut(s)	74
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	6 cut(s)	102, 105, 219, 255, 353, 374
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	6 cut(s)	102, 105, 219, 255, 353, 374
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	2 cut(s)	146, 231
GluI	GCNGC	6 cut(s)	102, 105, 219, 255, 353, 374
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	2 cut(s)	148, 233
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	2 cut(s)	147, 232
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	2 cut(s)	145, 230
HinP1I	GCGC	2 cut(s)	145, 230
HinfI	GANTC	4 cut(s)	46, 95, 170, 264
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	3 cut(s)	127, 136, 238
Hpy188I	TCNGA	2 cut(s)	115, 185
Hpy188III	TCNNGA	3 cut(s)	92, 152, 360
Hpy8I	GTNNAC	3 cut(s)	127, 136, 238
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	27, 242
HpyCH4V	TGCA	2 cut(s)	355, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	273, 285
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	2 cut(s)	145, 230
Kpn2I	TCCGGA	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	4 cut(s)	205, 241, 339, 360
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	242
MboII	GAAGA	4 cut(s)	21, 49, 173, 314
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	33, 300
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	121, 159, 205, 205, 208, 212, 220, 294
MroI	TCCGGA	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	315, 366
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	2 cut(s)	315, 366
MwoI	GCNNNNNNNGC	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 138
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	46, 95, 264
PkrI	GCNGC	6 cut(s)	103, 106, 220, 256, 354, 375
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	313, 364
PspGI	CCWGG	2 cut(s)	313, 364
PspPI	GGNCC	2 cut(s)	124, 362
PspPPI	RGGWCCY	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	239, 333
RsaNI	GTAC	2 cut(s)	238, 332
SapI	GCTCTTC	1 cut(s)	156
SatI	GCNGC	6 cut(s)	102, 105, 219, 255, 353, 374
Sau96I	GGNCC	2 cut(s)	124, 362
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	315, 366
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	8 cut(s)	279, 294, 312, 316, 330, 354, 367, 375
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	124, 362
Sse9I	AATT	2 cut(s)	33, 300
SsiI	CCGC	4 cut(s)	99, 102, 105, 122
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	313, 364
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	27, 242
TaqI	TCGA	2 cut(s)	153, 294
TasI	AATT	2 cut(s)	33, 300
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	104, 107
TfiI	GAWTC	3 cut(s)	46, 95, 264
TscAI	CASTG	2 cut(s)	214, 265
TseI	GCWGC	4 cut(s)	218, 254, 352, 373
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	214, 265
VpaK11BI	GGWCC	2 cut(s)	124, 362
XapI	RAATTY	1 cut(s)	300
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.