Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Forward (+)

40788073 .. 40790376

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTGAAGACGGCTTCATCAATCCCGCTTCTCATTCTCCTTGTCACATTCGCAATCGCCATGGCCGACTCTTCTTCTTCTGCTCCCCTCAATTCGGAATCCGCTGTCCACATCGTTTACACCGAGAAGCCGCAGCAAAATGAGGAGCCTGAGGCGTATCACATCCGAACCCTAGCCTCCGTCCTCGGCAGTGAGGAGGCTGCAAAGGACGCTCTGGTTTACAGTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCCTCAACAGGTTGCCGAAATCTCAAAACAACCTGGGGTTCTTCAGGTCGTACCAAGCAGGACACTCCAACTGCATAAGGGACCTGGGATTGGGAAGCTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

122

Amino Acids

12.96

Weight (kDa)

6.91

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	37 - 113	3.2e-17	Peptidase inhibitor I9
MORF_dom	PF21864	41 - 112	4e-09	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	26, 102, 131
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	94, 353
AjnI	CCWGG	2 cut(s)	295, 346
AluBI	AGCT	2 cut(s)	259, 361
AluI	AGCT	2 cut(s)	259, 361
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	4 cut(s)	133, 200, 236, 361
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	145, 187, 223, 348
BceAI	ACGGC	2 cut(s)	27, 249
BciT130I	CCWGG	2 cut(s)	297, 348
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	5 cut(s)	131, 134, 201, 237, 362
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	5 cut(s)	132, 135, 202, 238, 363
Bme1390I	CCNGG	2 cut(s)	297, 348
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	147, 345
BmrFI	CCNGG	2 cut(s)	297, 348
BpiI	GAAGAC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	60, 184, 296, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 353
Bse1I	ACTGG	1 cut(s)	240
Bse21I	CCTNAGG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	297, 348
BseDI	CCNNGG	4 cut(s)	60, 184, 296, 347
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	94, 353
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	3 cut(s)	158, 209, 255
BseXI	GCAGC	4 cut(s)	145, 187, 223, 348
BshFI	GGCC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	94, 353
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	65
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	3 cut(s)	26, 102, 131
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	147, 345
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	4 cut(s)	60, 184, 296, 347
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	297, 348
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	150, 255
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	2 cut(s)	297, 348
BstSCI	CCNGG	2 cut(s)	295, 346
BstV1I	GCAGC	4 cut(s)	145, 187, 223, 348
BstV2I	GAAGAC	1 cut(s)	14
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	196, 247
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	9 cut(s)	14, 65, 130, 148, 176, 200, 236, 259, 361
CviKI_1	RGCY	9 cut(s)	14, 65, 130, 148, 176, 200, 236, 259, 361
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	2 cut(s)	150, 255
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	295, 346
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 339
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	131, 134, 201, 237, 362
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	5 cut(s)	131, 134, 201, 237, 362
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	5 cut(s)	131, 134, 201, 237, 362
HaeIII	GGCC	1 cut(s)	65
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	3 cut(s)	68, 98, 246
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	109, 118, 220
Hpy188I	TCNGA	2 cut(s)	97, 167
Hpy8I	GTNNAC	3 cut(s)	109, 118, 220
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	203, 337, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	150, 255
Hsp92II	CATG	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	88, 145
Lsp1109I	GCAGC	4 cut(s)	145, 187, 223, 348
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	43, 224
MboII	GAAGA	5 cut(s)	19, 63, 66, 69, 296
MluCI	AATT	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	8 cut(s)	98, 136, 145, 187, 187, 190, 194, 276
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	297, 348
MvaI	CCWGG	2 cut(s)	297, 348
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	60
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	147, 345
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 120
PfeI	GAWTC	2 cut(s)	98, 246
PkrI	GCNGC	5 cut(s)	132, 135, 202, 238, 363
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	295, 346
PspGI	CCWGG	2 cut(s)	295, 346
PspN4I	GGNNCC	2 cut(s)	147, 345
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SatI	GCNGC	5 cut(s)	131, 134, 201, 237, 362
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	297, 348
SetI	ASST	6 cut(s)	261, 276, 298, 312, 349, 363
SinI	GGWCC	1 cut(s)	344
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	3 cut(s)	26, 102, 131
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	295, 346
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	1 cut(s)	91
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	98, 246
TscAI	CASTG	2 cut(s)	196, 247
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	4 cut(s)	133, 200, 236, 361
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	2 cut(s)	196, 247
VpaK11BI	GGWCC	1 cut(s)	344
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.