Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Reverse (-)

46611870 .. 46614199

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGTGAAGACGGCTTCATCAATCTCGCTTCTCATTCTCCTCCTCACATTCTCAATCGCCATGGCCGACTCTTCTTCCTCCTCTGCTCCCCTCAATTCGGAATCCGCTGTCCACATCGTTTACACCGAGAAGCCGCAGCAAAATGAGGAGCCTGAGGCCTATCACATCCGAACCCTAGCCTCCGTCCTCGGCAGTGAGGAGGCTGCAAAGGACGCTCTGGTTTACAGTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCCTCAACAGGTGGCCGAAATCTCGAAACAACCTGGGGTTCTTCAGGTCGTACCAAGCAGGACACTCCAACTGCATTCAGGATCTGGGATTGGGAAGCTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

123

Amino Acids

13.01

Weight (kDa)

6.4

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	38 - 114	3.3e-17	Peptidase inhibitor I9
MORF_dom	PF21864	42 - 112	4.8e-09	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 134
AclWI	GGATC	1 cut(s)	355
AcoI	YGGCCR	2 cut(s)	63, 279
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	262, 364
AluI	AGCT	2 cut(s)	262, 364
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	63, 156, 279
ApeKI	GCWGC	4 cut(s)	136, 203, 239, 364
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	148, 190, 226, 351
BceAI	ACGGC	2 cut(s)	27, 252
BciT130I	CCWGG	1 cut(s)	300
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	5 cut(s)	134, 137, 204, 240, 365
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	5 cut(s)	135, 138, 205, 241, 366
Bme1390I	CCNGG	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	60, 187, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	243
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	60, 187, 299
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	243
BseRI	GAGGAG	6 cut(s)	29, 32, 70, 161, 212, 258
BseXI	GCAGC	4 cut(s)	148, 190, 226, 351
BshFI	GGCC	3 cut(s)	65, 158, 281
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	65, 158, 281
Bsp143I	GATC	1 cut(s)	347
Bsp1720I	GCTNAGC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	2 cut(s)	105, 134
BspANI	GGCC	3 cut(s)	65, 158, 281
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	60, 187, 299
BssMI	GATC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	153, 258
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	4 cut(s)	148, 190, 226, 351
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	65, 158, 281
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	199, 250
CaiI	CAGNNNCTG	1 cut(s)	350
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	2 cut(s)	153, 258
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
EaeI	YGGCCR	2 cut(s)	63, 279
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	5 cut(s)	134, 137, 204, 240, 365
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	5 cut(s)	134, 137, 204, 240, 365
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	5 cut(s)	134, 137, 204, 240, 365
HaeIII	GGCC	3 cut(s)	65, 158, 281
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	3 cut(s)	68, 101, 249
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	112, 121, 223
Hpy188I	TCNGA	2 cut(s)	100, 170
Hpy188III	TCNNGA	2 cut(s)	289, 345
Hpy8I	GTNNAC	3 cut(s)	112, 121, 223
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	3 cut(s)	206, 340, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	153, 258
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	2 cut(s)	91, 148
Lsp1109I	GCAGC	4 cut(s)	148, 190, 226, 351
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	4 cut(s)	19, 63, 66, 299
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	150
NmeAIII	GCCGAG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 123
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	101, 249
PkrI	GCNGC	5 cut(s)	135, 138, 205, 241, 366
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SatI	GCNGC	5 cut(s)	134, 137, 204, 240, 365
Sau3AI	GATC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	5 cut(s)	264, 279, 301, 315, 366
Sse9I	AATT	1 cut(s)	94
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	105, 134
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	101, 249
TscAI	CASTG	2 cut(s)	199, 250
TseI	GCWGC	4 cut(s)	136, 203, 239, 364
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	2 cut(s)	199, 250
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.