Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Forward (+)

44506936 .. 44509082

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTGAAGACGGCTTCATCAATCTCGCTTCTCATTCTCCTCCTCACATTCGCAATCGCCATGGCCGACTCTTCTTCTTCTTCTTCTTCTTCTGCTCCCCTCAATTCGGAATCCGCTGTCCACATCGTTTACACCGAGAAGCCGCAGCAAAATGAGGAGCCTGAGGCCTATCACATCCGAACCCTAGCCTCCGTCCTCGGCAGTGAGGAGGCTGCAAAGGACGCTCTGGTTTACAGTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCCTCAACAGGTGGCCGAAATCTCGAAACAACCTGGGGTTCTTCAGGTCGTACCAAGCAGGACACTCCAACTACATTCAGGATCTGGGATTGGGAAGCTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

126

Amino Acids

13.26

Weight (kDa)

6.4

Isoelectric Point (pI)

63.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	41 - 117	3.5e-17	Peptidase inhibitor I9
MORF_dom	PF21864	45 - 115	5.1e-09	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 143
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	2 cut(s)	63, 288
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	2 cut(s)	271, 373
AluI	AGCT	2 cut(s)	271, 373
AlwI	GGATC	1 cut(s)	364
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	63, 165, 288
ApeKI	GCWGC	4 cut(s)	145, 212, 248, 373
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	157, 199, 235, 360
BceAI	ACGGC	2 cut(s)	27, 261
BciT130I	CCWGG	1 cut(s)	309
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	5 cut(s)	143, 146, 213, 249, 374
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	5 cut(s)	144, 147, 214, 250, 375
Bme1390I	CCNGG	1 cut(s)	309
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	60, 196, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	252
Bse21I	CCTNAGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	60, 196, 308
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	5 cut(s)	29, 32, 170, 221, 267
BseXI	GCAGC	4 cut(s)	157, 199, 235, 360
BshFI	GGCC	3 cut(s)	65, 167, 290
BslI	CCNNNNNNNGG	1 cut(s)	106
BsnI	GGCC	3 cut(s)	65, 167, 290
Bsp143I	GATC	1 cut(s)	356
Bsp1720I	GCTNAGC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	2 cut(s)	114, 143
BspANI	GGCC	3 cut(s)	65, 167, 290
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	3 cut(s)	60, 196, 308
BssMI	GATC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	162, 267
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	4 cut(s)	157, 199, 235, 360
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	65, 167, 290
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 259
CaiI	CAGNNNCTG	1 cut(s)	359
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	2 cut(s)	162, 267
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
EaeI	YGGCCR	2 cut(s)	63, 288
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	5 cut(s)	143, 146, 213, 249, 374
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	5 cut(s)	143, 146, 213, 249, 374
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	5 cut(s)	143, 146, 213, 249, 374
HaeIII	GGCC	3 cut(s)	65, 167, 290
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	3 cut(s)	68, 110, 258
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	121, 130, 232
Hpy188I	TCNGA	2 cut(s)	109, 179
Hpy188III	TCNNGA	2 cut(s)	298, 354
Hpy8I	GTNNAC	3 cut(s)	121, 130, 232
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	215, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	162, 267
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	100, 157
Lsp1109I	GCAGC	4 cut(s)	157, 199, 235, 360
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	9 cut(s)	19, 63, 66, 69, 72, 75, 78, 81, 308
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 132
PfeI	GAWTC	2 cut(s)	110, 258
PkrI	GCNGC	5 cut(s)	144, 147, 214, 250, 375
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SatI	GCNGC	5 cut(s)	143, 146, 213, 249, 374
Sau3AI	GATC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	5 cut(s)	273, 288, 310, 324, 375
Sse9I	AATT	1 cut(s)	103
SseBI	AGGCCT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	114, 143
SspMI	CTAG	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	103
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	110, 258
TscAI	CASTG	2 cut(s)	208, 259
TseI	GCWGC	4 cut(s)	145, 212, 248, 373
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	208, 259
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.