Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Forward (+)

3924148 .. 3926540

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATAAGCTCCAAGGCTTTCCTGTCTTCAATTTTGCTTCTGAATCTCATCATCTTCTCTGTATTTGCTATGGCCGACGAATCTGCTCCCAAATCCGTCGCTGCTGCTTCTTCCGAAACAGCGGTCCACATCATTTACACCGAGCGCCCTCTCGAAAATGAGGAGCCTGAGTCCTACCACATCCGAACCCTAGCCACCGTCCTCGGCAGTGAGGAGGCTGCGAGGGAGGCTCTTGTCTACAGTTACAAGACGGCTGCCAGTGGATTCTCCGCTAAGCTCACTCCTCAGCAGGTCGACCAAATTTCAAAGCTACCTGGGGTCCTTCAGGTTGTACCAAGCAGGACACTCCAGCTACACTCAGGACCGGGAAAGCTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

127

Amino Acids

13.56

Weight (kDa)

5.88

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	43 - 119	1.1e-15	Peptidase inhibitor I9
MORF_dom	PF21864	53 - 117	1.9e-09	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AccI	GTMKAC	2 cut(s)	237, 294
AciI	CCGC	2 cut(s)	122, 270
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	2 cut(s)	30, 306
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	5 cut(s)	9, 277, 310, 352, 373
AluI	AGCT	5 cut(s)	9, 277, 310, 352, 373
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	5 cut(s)	101, 104, 218, 254, 373
ApoI	RAATTY	1 cut(s)	300
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	124, 319, 362
AsuC2I	CCSGG	1 cut(s)	366
AvaII	GGWCC	3 cut(s)	124, 319, 362
BbsI	GAAGAC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	88, 91, 205, 241, 360
BceAI	ACGGC	1 cut(s)	267
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	366
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	238, 374
BfoI	RGCGCY	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	5 cut(s)	102, 105, 219, 255, 374
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	5 cut(s)	103, 106, 220, 256, 375
Bme1390I	CCNGG	2 cut(s)	315, 366
Bme18I	GGWCC	3 cut(s)	124, 319, 362
BmgT120I	GGNCC	3 cut(s)	124, 319, 362
BmiI	GGNNCC	2 cut(s)	165, 320
BmrFI	CCNGG	2 cut(s)	315, 366
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	12, 202, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	12, 202, 314
BseGI	GGATG	1 cut(s)	180
BseMII	CTCAG	3 cut(s)	159, 299, 372
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	3 cut(s)	176, 227, 273
BseXI	GCAGC	5 cut(s)	88, 91, 205, 241, 360
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	74
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	2 cut(s)	122, 270
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	160, 298, 371
BspLI	GGNNCC	2 cut(s)	165, 320
BspMAI	CTGCAG	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	3 cut(s)	12, 202, 314
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	199, 242
BstDEI	CTNAG	4 cut(s)	168, 273, 285, 358
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	313, 364
BstSFI	CTRYAG	2 cut(s)	238, 374
BstV1I	GCAGC	5 cut(s)	88, 91, 205, 241, 360
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	214, 265
BveI	ACCTGC	1 cut(s)	280
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	124, 319, 362
Csp6I	GTAC	1 cut(s)	332
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	4 cut(s)	168, 273, 285, 358
EaeI	YGGCCR	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	3 cut(s)	124, 319, 362
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaiI	YATR	1 cut(s)	71
FblI	GTMKAC	2 cut(s)	237, 294
Fnu4HI	GCNGC	5 cut(s)	102, 105, 219, 255, 374
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	5 cut(s)	102, 105, 219, 255, 374
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	5 cut(s)	102, 105, 219, 255, 374
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	43, 80, 170, 264
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	127, 238, 295
Hpy188I	TCNGA	3 cut(s)	42, 115, 185
Hpy188III	TCNNGA	2 cut(s)	152, 360
Hpy8I	GTNNAC	3 cut(s)	127, 238, 295
Hpy99I	CGWCG	2 cut(s)	80, 101
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	2 cut(s)	199, 242
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	4 cut(s)	168, 273, 285, 358
HspAI	GCGC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	14, 91, 163
Lsp1109I	GCAGC	5 cut(s)	88, 91, 205, 241, 360
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	242
MboII	GAAGA	3 cut(s)	18, 46, 102
MluCI	AATT	2 cut(s)	30, 300
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	154, 159, 205, 208, 212, 216, 220, 294
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	315, 366
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	366
NlaIV	GGNNCC	2 cut(s)	165, 320
NmeAIII	GCCGAG	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	43, 80, 264
PkrI	GCNGC	5 cut(s)	103, 106, 220, 256, 375
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	1 cut(s)	319
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	165, 320
PspPI	GGNCC	3 cut(s)	124, 319, 362
PspPPI	RGGWCCY	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	378
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	5 cut(s)	102, 105, 219, 255, 374
Sau96I	GGNCC	3 cut(s)	124, 319, 362
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	315, 366
SetI	ASST	8 cut(s)	11, 279, 294, 312, 316, 330, 354, 375
SfcI	CTRYAG	2 cut(s)	238, 374
SinI	GGWCC	3 cut(s)	124, 319, 362
Sse9I	AATT	2 cut(s)	30, 300
SsiI	CCGC	2 cut(s)	122, 270
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	313, 364
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	199, 242
TaqI	TCGA	2 cut(s)	153, 294
TasI	AATT	2 cut(s)	30, 300
TfiI	GAWTC	3 cut(s)	43, 80, 264
TscAI	CASTG	2 cut(s)	214, 265
TseI	GCWGC	5 cut(s)	101, 104, 218, 254, 373
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	2 cut(s)	214, 265
VpaK11BI	GGWCC	3 cut(s)	124, 319, 362
XapI	RAATTY	1 cut(s)	300
XmiI	GTMKAC	2 cut(s)	237, 294
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.