Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Forward (+)

31248230 .. 31248949

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0286500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGGAGGAGGTCTCAGCCCGTATGGCTGCTGCACTCGTAATCAAGGATAATGGAAGGGCGTCGTTCGGGGTTGCGGGTGATCGATTCATTCTGCGTTTCAACAAGACTGAAGAACGGGATAAGATCTTACTCGGAGGATCGTGGTTTTACGGTCGTTCTATGTTTGGTTTGGCGGTGTATGACCACTGCTGTGAGGTGAAGGCGGTGCCTATCCCTGTGATCCTGGTCTGGGTGGAAGTGTTTGGCCTCCCTCCCATTCTGATGACCGTTGAAGCTGTCTCCATGATTGATGCATCTTTGGGTCAAGTTCTTCAGTTAGATAAAGCGAATATCCGGTGTGGTTTGAAGGCTAGGGTCCGCATTTCCCATCTGATCACTACTCCAATGAAGCAAGCCTATCCTCCCATGCTTTTCGAATTTGGCACCGGGAAGGATGTGGTTTCTGCTATGGTTACTTCCAGGTATGAGAAGATGGTTGGTTTTTGGAGCTTACTGGAGCATCAGGCTTCCGGCTGCACAGGGCAGCTAAATATGTTCGGAACGGTTACTAGGGCTGGGGCGCAGCGTCAGGCCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

193

Amino Acids

21.21

Weight (kDa)

8.96

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	208, 425
AciI	CCGC	4 cut(s)	77, 176, 206, 361
AclWI	GGATC	2 cut(s)	148, 217
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	2 cut(s)	132, 299
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	103, 275, 349
AjnI	CCWGG	2 cut(s)	225, 461
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	278, 492, 529
AluI	AGCT	3 cut(s)	278, 492, 529
Alw26I	GTCTC	2 cut(s)	19, 286
AlwI	GGATC	2 cut(s)	148, 217
AoxI	GGCC	2 cut(s)	247, 573
ApeKI	GCWGC	5 cut(s)	29, 32, 516, 526, 565
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	430, 577
AsuHPI	GGTGA	2 cut(s)	92, 211
AsuII	TTCGAA	1 cut(s)	417
AvaII	GGWCC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	208, 425
BbvI	GCAGC	5 cut(s)	16, 19, 503, 538, 577
BccI	CCATC	2 cut(s)	378, 469
BciT130I	CCWGG	2 cut(s)	227, 463
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	2 cut(s)	430, 577
BcoDI	GTCTC	2 cut(s)	19, 286
BfaI	CTAG	2 cut(s)	354, 552
BglI	GCCNNNNNGGC	1 cut(s)	26
BglII	AGATCT	1 cut(s)	126
BisI	GCNGC	5 cut(s)	30, 33, 517, 527, 566
BlsI	GCNGC	5 cut(s)	31, 34, 518, 528, 567
Bme1390I	CCNGG	4 cut(s)	227, 430, 463, 577
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	3 cut(s)	210, 359, 427
BmrFI	CCNGG	4 cut(s)	227, 430, 463, 577
BmsI	GCATC	3 cut(s)	283, 305, 511
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	417
BpuMI	CCSGG	2 cut(s)	430, 577
Bsa29I	ATCGAT	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	227, 463
BseCI	ATCGAT	1 cut(s)	85
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	5 cut(s)	16, 19, 503, 538, 577
BseYI	CCCAGC	1 cut(s)	557
BsgI	GTGCAG	2 cut(s)	18, 502
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	249, 575
BshNI	GGYRCC	2 cut(s)	208, 425
BshVI	ATCGAT	1 cut(s)	85
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	4 cut(s)	337, 429, 513, 576
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	19, 286
BsnI	GGCC	2 cut(s)	249, 575
Bso31I	GGTCTC	1 cut(s)	19
Bsp119I	TTCGAA	1 cut(s)	417
Bsp143I	GATC	5 cut(s)	82, 126, 140, 222, 375
BspACI	CCGC	4 cut(s)	77, 176, 206, 361
BspANI	GGCC	2 cut(s)	249, 575
BspCNI	CTCAG	1 cut(s)	29
BspDI	ATCGAT	1 cut(s)	85
BspLI	GGNNCC	3 cut(s)	210, 359, 427
BspPI	GGATC	2 cut(s)	148, 217
BspT104I	TTCGAA	1 cut(s)	417
BspT107I	GGYRCC	2 cut(s)	208, 425
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	501
BssMI	GATC	5 cut(s)	82, 126, 140, 222, 375
BssNI	GRCGYC	1 cut(s)	62
Bst2UI	CCWGG	2 cut(s)	227, 463
Bst4CI	ACNGT	3 cut(s)	155, 271, 547
BstACI	GRCGYC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	5 cut(s)	85, 129, 143, 225, 378
BstMAI	GTCTC	2 cut(s)	19, 286
BstMBI	GATC	5 cut(s)	82, 126, 140, 222, 375
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	227, 463
BstSCI	CCNGG	4 cut(s)	225, 428, 461, 575
BstV1I	GCAGC	5 cut(s)	16, 19, 503, 538, 577
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
Bsu15I	ATCGAT	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	249, 575
BsuTUI	ATCGAT	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	85
CseI	GACGC	2 cut(s)	51, 557
CviAII	CATG	2 cut(s)	286, 409
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	5 cut(s)	84, 128, 142, 224, 377
DpnII	GATC	5 cut(s)	82, 126, 140, 222, 375
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	132, 299
EcoRII	CCWGG	2 cut(s)	225, 461
EcoT22I	ATGCAT	1 cut(s)	298
FaeI	CATG	2 cut(s)	289, 412
FaiI	YATR	8 cut(s)	26, 164, 183, 287, 410, 452, 468, 536
FatI	CATG	2 cut(s)	285, 408
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	5 cut(s)	30, 33, 517, 527, 566
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	5 cut(s)	30, 33, 517, 527, 566
FspBI	CTAG	2 cut(s)	354, 552
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	5 cut(s)	30, 33, 517, 527, 566
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	249, 575
HapII	CCGG	4 cut(s)	337, 429, 513, 576
HgaI	GACGC	2 cut(s)	51, 557
HhaI	GCGC	1 cut(s)	565
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	2 cut(s)	289, 412
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	4 cut(s)	337, 429, 513, 576
HphI	GGTGA	2 cut(s)	92, 211
Hpy188I	TCNGA	4 cut(s)	137, 264, 375, 542
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	51, 196, 343, 427
HpyCH4III	ACNGT	3 cut(s)	155, 271, 547
HpyCH4V	TGCA	3 cut(s)	35, 296, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	16
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	289, 412
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	5 cut(s)	82, 126, 140, 222, 375
LmnI	GCTCC	2 cut(s)	489, 499
Lsp1109I	GCAGC	5 cut(s)	16, 19, 503, 538, 577
LweI	GCATC	3 cut(s)	283, 305, 511
MaeI	CTAG	2 cut(s)	354, 552
MaeIII	GTNAC	2 cut(s)	454, 547
MalI	GATC	5 cut(s)	84, 128, 142, 224, 377
MboI	GATC	5 cut(s)	82, 126, 140, 222, 375
MboII	GAAGA	3 cut(s)	125, 305, 484
MflI	RGATCY	1 cut(s)	126
MluCI	AATT	1 cut(s)	419
MnlI	CCTC	6 cut(s)	4, 131, 190, 260, 264, 414
Mph1103I	ATGCAT	1 cut(s)	298
MslI	CAYNNNNRTG	2 cut(s)	192, 263
MspI	CCGG	4 cut(s)	337, 429, 513, 576
MspR9I	CCNGG	4 cut(s)	227, 430, 463, 577
MvaI	CCWGG	2 cut(s)	227, 463
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	2 cut(s)	430, 577
NdeII	GATC	5 cut(s)	82, 126, 140, 222, 375
NlaIII	CATG	2 cut(s)	289, 412
NlaIV	GGNNCC	3 cut(s)	210, 359, 427
NsiI	ATGCAT	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	5 cut(s)	31, 34, 518, 528, 567
Psp6I	CCWGG	2 cut(s)	225, 461
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	2 cut(s)	225, 461
PspN4I	GGNNCC	3 cut(s)	210, 359, 427
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	126
RseI	CAYNNNNRTG	2 cut(s)	192, 263
SatI	GCNGC	5 cut(s)	30, 33, 517, 527, 566
Sau3AI	GATC	5 cut(s)	82, 126, 140, 222, 375
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	4 cut(s)	227, 430, 463, 577
SetI	ASST	6 cut(s)	15, 201, 280, 467, 494, 531
SfaNI	GCATC	3 cut(s)	283, 305, 511
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	192, 263
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	4 cut(s)	77, 176, 206, 361
SspMI	CTAG	2 cut(s)	354, 552
StyD4I	CCNGG	4 cut(s)	225, 428, 461, 575
TaaI	ACNGT	3 cut(s)	155, 271, 547
TaqI	TCGA	2 cut(s)	85, 417
TasI	AATT	1 cut(s)	419
TfiI	GAWTC	1 cut(s)	87
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	5 cut(s)	29, 32, 516, 526, 565
TspDTI	ATGAA	2 cut(s)	79, 404
TspRI	CASTG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	2 cut(s)	354, 552
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.