Rmu_sc0001171.1_g000020

Xylem serine proteinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001171.1
OG0009615
Physical Location & Seq
Reverse (-)
85065 .. 87126
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001171.1_g000020.1.cds

Sequence Viewer

Length: 312 bp
atggccgactcttcttcttcttctgctcccctcaattcggaatccgctgtccacatcgtttataccgagaagccgcagcaaaatgaggagcctgaggcctatcacatccgaaccctagcctccgtcctcggcagtgaggaggctgcaaaggacgctctggtttacagttacaagacggctgccagtggattctctgctaagctcactcctcaacaggtggccgaaatctcgaaacaacctggggttcttcaggtcgtaccaagcaggacactccaactgcattcaggatctgggattgggaagctgcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9

Protein Analysis

103

Amino Acids

10.91

Weight (kDa)

6.04

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 74
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 2 cut(s) 3, 219
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 37
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 2 cut(s) 202, 304
AluI AGCT 2 cut(s) 202, 304
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 3 cut(s) 3, 96, 219
ApeKI GCWGC 4 cut(s) 76, 143, 179, 304
AxyI CCTNAGG 1 cut(s) 93
BbvI GCAGC 4 cut(s) 88, 130, 166, 291
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 240
BfaI CTAG 1 cut(s) 116
BisI GCNGC 5 cut(s) 74, 77, 144, 180, 305
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 5 cut(s) 75, 78, 145, 181, 306
Bme1390I CCNGG 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 127, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 183
Bse21I CCTNAGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 127, 239
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 3 cut(s) 101, 152, 198
BseXI GCAGC 4 cut(s) 88, 130, 166, 291
BshFI GGCC 3 cut(s) 5, 98, 221
BslI CCNNNNNNNGG 1 cut(s) 37
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 3 cut(s) 5, 98, 221
Bsp143I GATC 1 cut(s) 287
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 2 cut(s) 45, 74
BspANI GGCC 3 cut(s) 5, 98, 221
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 295
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 127, 239
BssMI GATC 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 93, 198
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 1 cut(s) 290
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstV1I GCAGC 4 cut(s) 88, 130, 166, 291
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 93
BsuRI GGCC 3 cut(s) 5, 98, 221
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 139, 190
CaiI CAGNNNCTG 1 cut(s) 290
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 257
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 2 cut(s) 93, 198
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 3, 219
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 238
FaiI YATR 1 cut(s) 63
Fnu4HI GCNGC 5 cut(s) 74, 77, 144, 180, 305
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 5 cut(s) 74, 77, 144, 180, 305
FspBI CTAG 1 cut(s) 116
GluI GCNGC 5 cut(s) 74, 77, 144, 180, 305
HaeIII GGCC 3 cut(s) 5, 98, 221
HgaI GACGC 1 cut(s) 161
HinfI GANTC 3 cut(s) 8, 41, 189
Hpy166II GTNNAC 2 cut(s) 52, 163
Hpy188I TCNGA 2 cut(s) 40, 110
Hpy188III TCNNGA 2 cut(s) 229, 285
Hpy8I GTNNAC 2 cut(s) 52, 163
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 146, 280, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 93, 198
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 31, 88
Lsp1109I GCAGC 4 cut(s) 88, 130, 166, 291
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 5 cut(s) 3, 6, 9, 12, 239
MflI RGATCY 1 cut(s) 287
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 8 cut(s) 41, 79, 88, 130, 130, 133, 137, 219
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 108
PceI AGGCCT 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 41, 189
PkrI GCNGC 5 cut(s) 75, 78, 145, 181, 306
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SatI GCNGC 5 cut(s) 74, 77, 144, 180, 305
Sau3AI GATC 1 cut(s) 287
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 240
SetI ASST 5 cut(s) 204, 219, 241, 255, 306
Sse9I AATT 1 cut(s) 34
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 2 cut(s) 45, 74
SspMI CTAG 1 cut(s) 116
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 230
TasI AATT 1 cut(s) 34
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 2 cut(s) 41, 189
TscAI CASTG 2 cut(s) 139, 190
TseI GCWGC 4 cut(s) 76, 143, 179, 304
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 139, 190
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.