Rh2AG338600

Xylem serine proteinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0009615
Physical Location & Seq
Reverse (-)
49071405 .. 49073673
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG338600.1

Sequence Viewer

Length: 405 bp
ATGGTGAAGACGGCGTCATCAATCTCGCTTCTCATTCTCCTCCTCACATTCGCAATCGCCATGGCCGACTCTTCTTCTTCTGCTCCCCTCAATTCGGAATCCGCTGTCCACATCGTTTACACCGAGAAGCCGCAGCAAAATGAGGAGCCTGAGGCCTATCACATCCGAACCCTAGCCTCCGTCCTCGGCAGTGAGGAGGCTGCAAAGGACGCTCTGGTTTACAGTTACAAGACGGCTGCCAGTGGATTTTCTGCTAAGCTCACTCCTCAACAGGTGGCCGAAATCTCGAGTAAGCCTTTCTCTCTTTGCCCGTTCATGATTTATATGCGCGTTTCTGATATGATTGTCGTGATTTTATTTCATACACCGTCATTATTTGCCTTTGTATATTATGATTTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9

Protein Analysis

134

Amino Acids

14.7

Weight (kDa)

5.21

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 37 - 99 1.1e-10 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 330
AciI CCGC 2 cut(s) 102, 131
AcoI YGGCCR 2 cut(s) 63, 276
AcyI GRCGYC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 3 cut(s) 63, 153, 276
ApeKI GCWGC 3 cut(s) 133, 200, 236
AspLEI GCGC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 286
AxyI CCTNAGG 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 145, 187, 223
BceAI ACGGC 2 cut(s) 27, 249
BfaI CTAG 1 cut(s) 173
BisI GCNGC 4 cut(s) 131, 134, 201, 237
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 4 cut(s) 132, 135, 202, 238
BmeT110I CYCGRG 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 60, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 240
Bse21I CCTNAGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 60, 184
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 5 cut(s) 29, 32, 158, 209, 255
BseXI GCAGC 3 cut(s) 145, 187, 223
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 3 cut(s) 65, 155, 278
BsiHKCI CYCGRG 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 3 cut(s) 65, 155, 278
BsoBI CYCGRG 1 cut(s) 286
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 2 cut(s) 102, 131
BspANI GGCC 3 cut(s) 65, 155, 278
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 60, 184
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 224, 369
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 14
BstDEI CTNAG 2 cut(s) 150, 255
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 1 cut(s) 330
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 3 cut(s) 145, 187, 223
BstV2I GAAGAC 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 3 cut(s) 65, 155, 278
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 162
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 196, 247
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 330
CseI GACGC 2 cut(s) 3, 218
CviAII CATG 2 cut(s) 61, 316
DdeI CTNAG 2 cut(s) 150, 255
EaeI YGGCCR 2 cut(s) 63, 276
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 64, 319
FaiI YATR 9 cut(s) 62, 317, 324, 326, 341, 363, 388, 393, 403
FatI CATG 2 cut(s) 60, 315
Fnu4HI GCNGC 4 cut(s) 131, 134, 201, 237
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 131, 134, 201, 237
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 329
GluI GCNGC 4 cut(s) 131, 134, 201, 237
HaeIII GGCC 3 cut(s) 65, 155, 278
HgaI GACGC 2 cut(s) 3, 218
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 2 cut(s) 64, 319
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 2 cut(s) 68, 98
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 109, 118, 220
Hpy188I TCNGA 3 cut(s) 97, 167, 337
Hpy188III TCNNGA 3 cut(s) 286, 316, 349
Hpy8I GTNNAC 3 cut(s) 109, 118, 220
HpyCH4III ACNGT 2 cut(s) 224, 369
HpyCH4V TGCA 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 150, 255
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 64, 319
HspAI GCGC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 88, 145
LpnPI CCDG 4 cut(s) 162, 200, 253, 257
Lsp1109I GCAGC 3 cut(s) 145, 187, 223
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 224
MboII GAAGA 4 cut(s) 19, 63, 66, 69
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 104
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 60
NlaIII CATG 2 cut(s) 64, 319
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 286
PagI TCATGA 1 cut(s) 315
PceI AGGCCT 1 cut(s) 155
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 120
PfeI GAWTC 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 4 cut(s) 132, 135, 202, 238
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 147
PsyI GACNNNGTC 1 cut(s) 13
SatI GCNGC 4 cut(s) 131, 134, 201, 237
SchI GAGTC 1 cut(s) 62
SetI ASST 2 cut(s) 261, 276
Sfr274I CTCGAG 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 1 cut(s) 91
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 2 cut(s) 102, 131
SspMI CTAG 1 cut(s) 173
StuI AGGCCT 1 cut(s) 155
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 224, 369
TaqI TCGA 1 cut(s) 287
TasI AATT 1 cut(s) 91
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 2 cut(s) 196, 247
TseI GCWGC 3 cut(s) 133, 200, 236
TspDTI ATGAA 2 cut(s) 304, 350
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 2 cut(s) 196, 247
Tth111I GACNNNGTC 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 286
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.