Rroxscaffold_1G00035970

Subtilisin-like protease

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
52464477 .. 52467313
2837 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00035970.1

Sequence Viewer

Length: 207 bp
ATGGACATACATCAATACTTTATCTCTTCTGCAAAATCAATTTGTTTAATTTTGATTTTGAAATATACACACAGTGAGGAGGCTGACAAGGACGCTCTGGTTTACATTTACAAGACGGCTGCCAGTGGATTCTCTTGCAAGCTCACTCCTCAACAGCTCGCCGAAATCTCAAGAAGGTGGAGAAATGAGAGCAGGAACAAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

68

Amino Acids

7.88

Weight (kDa)

9.03

Isoelectric Point (pI)

66.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 24 - 59 5.5e-06 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 142, 157
AluI AGCT 2 cut(s) 142, 157
ApeKI GCWGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 132
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 92, 138
BseXI GCAGC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 140, 159
BstV1I GCAGC 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 79, 130
Cac8I GCNNGC 2 cut(s) 140, 159
CseI GACGC 1 cut(s) 101
CviJI RGCY 4 cut(s) 83, 119, 142, 157
CviKI_1 RGCY 4 cut(s) 83, 119, 142, 157
DraIII CACNNNGTG 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
FaiI YATR 2 cut(s) 8, 66
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HgaI GACGC 1 cut(s) 101
HinfI GANTC 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 32, 138
LpnPI CCDG 3 cut(s) 83, 136, 178
Lsp1109I GCAGC 1 cut(s) 106
MboII GAAGA 1 cut(s) 18
MluCI AATT 2 cut(s) 39, 48
MnlI CCTC 3 cut(s) 70, 73, 159
MseI TTAA 1 cut(s) 47
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 120
SetI ASST 3 cut(s) 144, 159, 179
SgeI CNNG 8 cut(s) 100, 110, 124, 135, 147, 151, 170, 183
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 2 cut(s) 39, 48
TaaI ACNGT 1 cut(s) 74
TasI AATT 2 cut(s) 39, 48
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 79, 130
TseI GCWGC 1 cut(s) 119
TspRI CASTG 2 cut(s) 79, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.