Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Forward (+)

7021062 .. 7024448

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1041700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTAAGCACCGCCAGCTCCAACGCTTTCCTGTCTTTAATTTTGCTTTTGAATCTCATCATCTTCTCTGTGTTCGCTATGGCCGACGAATCTGCTCCCAAATCCGTCGCTGCTTCTTCTTCCGAAACGGCGGTCCACATCGTTTACACCGAACGCCCTCTTGAAAATGAGGAGCCTGAGTCCTATCACATCCGAACCCTAGCCTCCGTCCTCGGCAGTGAGGAGGCTGCGAAGGAGGCTCTGGTATACAGTTACAAGACGGCTGCCAGTGGATTCTCCGCTAAGCTCACTCCTCAGCAGGTCGACCAAATTTCAAAGCTACCTGGGGTCCTTCAGGTTGTACCAAGCAGGACACTCCAGCTACATTCAGGACCGGGAAAGCTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

130

Amino Acids

13.79

Weight (kDa)

5.54

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	46 - 122	1.6e-16	Peptidase inhibitor I9
MORF_dom	PF21864	56 - 120	1.8e-09	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	246, 303
AciI	CCGC	3 cut(s)	12, 131, 279
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	52, 164, 315
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	5 cut(s)	18, 286, 319, 361, 382
AluI	AGCT	5 cut(s)	18, 286, 319, 361, 382
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	4 cut(s)	110, 227, 263, 382
ApoI	RAATTY	1 cut(s)	309
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspS9I	GGNCC	3 cut(s)	133, 328, 371
AsuC2I	CCSGG	1 cut(s)	375
AvaII	GGWCC	3 cut(s)	133, 328, 371
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	4 cut(s)	97, 214, 250, 369
BceAI	ACGGC	2 cut(s)	144, 276
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	375
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	4 cut(s)	111, 228, 264, 383
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	4 cut(s)	112, 229, 265, 384
Bme1390I	CCNGG	2 cut(s)	324, 375
Bme18I	GGWCC	3 cut(s)	133, 328, 371
BmgT120I	GGNCC	3 cut(s)	133, 328, 371
BmiI	GGNNCC	2 cut(s)	174, 329
BmrFI	CCNGG	2 cut(s)	324, 375
BpmI	CTGGAG	1 cut(s)	341
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	211, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bse1I	ACTGG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	211, 323
BseGI	GGATG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	168, 308
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	3 cut(s)	185, 236, 282
BseXI	GCAGC	4 cut(s)	97, 214, 250, 369
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	374
BsnI	GGCC	1 cut(s)	83
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	12, 131, 279
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	169, 307
BspLI	GGNNCC	2 cut(s)	174, 329
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	211, 323
BssNAI	GTATAC	1 cut(s)	247
Bst1107I	GTATAC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	177, 282, 294
BstF5I	GGATG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 236
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	322, 373
BstSFI	CTRYAG	1 cut(s)	383
BstV1I	GCAGC	4 cut(s)	97, 214, 250, 369
BstZ17I	GTATAC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	223, 274
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	133, 328, 371
Csp6I	GTAC	1 cut(s)	341
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	3 cut(s)	177, 282, 294
EaeI	YGGCCR	1 cut(s)	81
Eco47I	GGWCC	3 cut(s)	133, 328, 371
Eco57I	CTGAAG	1 cut(s)	317
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	322
FaiI	YATR	2 cut(s)	80, 247
FblI	GTMKAC	2 cut(s)	246, 303
Fnu4HI	GCNGC	4 cut(s)	111, 228, 264, 383
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	111, 228, 264, 383
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	4 cut(s)	111, 228, 264, 383
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	374
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	52, 89, 179, 273
HpaII	CCGG	1 cut(s)	374
Hpy166II	GTNNAC	4 cut(s)	136, 145, 247, 304
Hpy188I	TCNGA	2 cut(s)	124, 194
Hpy188III	TCNNGA	2 cut(s)	161, 369
Hpy8I	GTNNAC	4 cut(s)	136, 145, 247, 304
Hpy99I	CGWCG	2 cut(s)	89, 110
HpyAV	CCTTC	2 cut(s)	226, 341
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 236
HpyF3I	CTNAG	3 cut(s)	177, 282, 294
LmnI	GCTCC	3 cut(s)	23, 100, 172
Lsp1109I	GCAGC	4 cut(s)	97, 214, 250, 369
MaeI	CTAG	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	251
MboII	GAAGA	3 cut(s)	55, 108, 111
MluCI	AATT	2 cut(s)	39, 309
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	8 cut(s)	163, 168, 214, 214, 217, 221, 229, 303
MseI	TTAA	2 cut(s)	5, 38
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	324, 375
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	15, 236
NciI	CCSGG	1 cut(s)	375
NlaIV	GGNNCC	2 cut(s)	174, 329
NmeAIII	GCCGAG	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 147
PfeI	GAWTC	3 cut(s)	52, 89, 273
PkrI	GCNGC	4 cut(s)	112, 229, 265, 384
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	174, 329
PspPI	GGNCC	3 cut(s)	133, 328, 371
PspPPI	RGGWCCY	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	5, 38
SatI	GCNGC	4 cut(s)	111, 228, 264, 383
Sau96I	GGNCC	3 cut(s)	133, 328, 371
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	324, 375
SetI	ASST	8 cut(s)	20, 288, 303, 321, 325, 339, 363, 384
SfcI	CTRYAG	1 cut(s)	383
SinI	GGWCC	3 cut(s)	133, 328, 371
Sse9I	AATT	2 cut(s)	39, 309
SsiI	CCGC	3 cut(s)	12, 131, 279
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	322, 373
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	39, 309
TfiI	GAWTC	3 cut(s)	52, 89, 273
Tru1I	TTAA	2 cut(s)	5, 38
Tru9I	TTAA	2 cut(s)	5, 38
TscAI	CASTG	2 cut(s)	223, 274
TseI	GCWGC	4 cut(s)	110, 227, 263, 382
TspGWI	ACGGA	2 cut(s)	94, 196
TspRI	CASTG	2 cut(s)	223, 274
VpaK11BI	GGWCC	3 cut(s)	133, 328, 371
XapI	RAATTY	1 cut(s)	309
XmiI	GTMKAC	2 cut(s)	246, 303
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.