Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009615

Physical Location & Seq

Genomic Coordinates Reverse (-)

20923354 .. 20924362

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACACATGCAGAGTTACTTATGTCTGTAACATATTTACAAAAGATGGCTTTAGCTGTTCATAACAAGCGGGAACTTCCTTTTCCAAAATCTTCATCCTGTCAGCTGTTTACAAGATCAGTGTATCAAAATATGAAGAAGACAGCTTCATCAATCTCGCTTCTTATTCTTGTTCTCATATTTGCAATCGTCATGGCCGACGCTTGTGCTCCTTCACCCTCTTCTGCTCCTCCTCCGGAACCTCCTGCTTACATCGTTTACACTTTGAAGCCGGAAAATGAGGAGCCTAAGGCCTATCACATCCGAATCCTAACCGCGGTCCTTGGCAGTGAGGAGGCTGCCGAGAAGGCTCTAGTTTACAGTTACAAGATTATCCCTGGATTCTCTGCTAAGCTCACTCCAGAACAGGTCACCGAAATCCAGAAACAACCTGGGGTTCTTCAGGTCCAACCAAACAGGACATACAAACTACTGGATTCAGGACCTCAGATCTTACCAAGGATTAATCTGAAGCTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9

Protein Analysis

174

Amino Acids

19.2

Weight (kDa)

9.19

Isoelectric Point (pI)

67.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	84 - 157	7.4e-14	Peptidase inhibitor I9
MORF_dom	PF21864	92 - 156	2.9e-07	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71950
fragaria_vesca	FvH4_6g27290 FvH4_6g27290 FvH4_6g27290 FvH4_6g27310
malus_domestica	MD05G1041700.v1.1 MD10G1048200.v1.1 MD11G1194700.v1.1
prunus_persica	Prupe.8G057500_v2.0.a1
pyrus_communis	pycom05g03440 pycom10g03410
rosa_chinensis	RchiOBHm_Chr2g0129441
rosa_multiflora	Rmu_sc0001171.1_g000020
rosa_roxburghii	Rroxscaffold_1G00035970 Rroxscaffold_2G00114600 Rroxscaffold_3G00267160
rosa_rugosa	Rorug02G0286500 Rorug02G0286600
rosa_samantha	Rh2AG338600 Rh2BG346700 Rh7BG090100
rosa_wichuraiana	Rw2G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	317
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	3 cut(s)	70, 315, 317
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	376, 430
AluBI	AGCT	5 cut(s)	56, 106, 146, 394, 514
AluI	AGCT	5 cut(s)	56, 106, 146, 394, 514
Alw21I	GWGCWC	1 cut(s)	211
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	2 cut(s)	195, 291
ApeKI	GCWGC	2 cut(s)	338, 514
AseI	ATTAAT	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	319, 445, 482
AsuHPI	GGTGA	2 cut(s)	207, 403
AvaII	GGWCC	3 cut(s)	319, 445, 482
AxyI	CCTNAGG	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	325, 501
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	2 cut(s)	378, 432
BfaI	CTAG	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	347
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	2 cut(s)	339, 515
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	340, 516
Bme1390I	CCNGG	2 cut(s)	378, 432
Bme18I	GGWCC	3 cut(s)	319, 445, 482
BmgT120I	GGNCC	3 cut(s)	319, 445, 482
BmiI	GGNNCC	2 cut(s)	240, 285
BmrFI	CCNGG	2 cut(s)	378, 432
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaJI	CCNNGG	5 cut(s)	315, 322, 376, 431, 497
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	477
Bse21I	CCTNAGG	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	378, 432
BseDI	CCNNGG	5 cut(s)	315, 322, 376, 431, 497
BseGI	GGATG	2 cut(s)	95, 300
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	4 cut(s)	219, 222, 296, 347
BseXI	GCAGC	2 cut(s)	325, 501
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	197, 293
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	236, 272
BslI	CCNNNNNNNGG	1 cut(s)	316
BsnI	GGCC	2 cut(s)	197, 293
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	116, 489
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	3 cut(s)	70, 315, 317
BspANI	GGCC	2 cut(s)	197, 293
BspCNI	CTCAG	1 cut(s)	499
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	240, 285
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	5 cut(s)	315, 322, 376, 431, 497
BssMI	GATC	2 cut(s)	116, 489
BssT1I	CCWWGG	2 cut(s)	322, 497
Bst2UI	CCWGG	2 cut(s)	378, 432
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	288, 390, 486
BstDSI	CCRYGG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	95, 300
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	2 cut(s)	119, 492
BstMBI	GATC	2 cut(s)	116, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	378, 432
BstNSI	RCATGY	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	376, 430
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	325, 501
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	197, 293
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	95, 300
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	126, 334
Cfr13I	GGNCC	3 cut(s)	319, 445, 482
Cfr42I	CCGCGG	1 cut(s)	318
CseI	GACGC	1 cut(s)	209
CviAII	CATG	2 cut(s)	8, 193
DdeI	CTNAG	3 cut(s)	288, 390, 486
DpnI	GATC	2 cut(s)	118, 491
DpnII	GATC	2 cut(s)	116, 489
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	322, 497
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	3 cut(s)	319, 445, 482
Eco57I	CTGAAG	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	288
Eco91I	GGTNACC	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	376, 430
EcoT14I	CCWWGG	2 cut(s)	322, 497
ErhI	CCWWGG	2 cut(s)	322, 497
FaeI	CATG	2 cut(s)	11, 196
FaiI	YATR	8 cut(s)	9, 23, 34, 63, 134, 179, 194, 463
FatI	CATG	2 cut(s)	7, 192
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	339, 515
FokI	GGATG	2 cut(s)	82, 287
Fsp4HI	GCNGC	2 cut(s)	339, 515
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	2 cut(s)	339, 515
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	197, 293
HapII	CCGG	2 cut(s)	236, 272
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	11, 196
HinfI	GANTC	3 cut(s)	306, 381, 476
HpaII	CCGG	2 cut(s)	236, 272
HphI	GGTGA	2 cut(s)	207, 403
Hpy166II	GTNNAC	3 cut(s)	111, 259, 358
Hpy188I	TCNGA	3 cut(s)	305, 489, 510
Hpy188III	TCNNGA	4 cut(s)	236, 401, 421, 480
Hpy8I	GTNNAC	3 cut(s)	111, 259, 358
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	222, 340
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	3 cut(s)	11, 185, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	3 cut(s)	288, 390, 486
Hsp92II	CATG	2 cut(s)	11, 196
Kpn2I	TCCGGA	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	116, 489
LmnI	GCTCC	3 cut(s)	214, 232, 283
Lsp1109I	GCAGC	2 cut(s)	325, 501
MaeI	CTAG	1 cut(s)	353
MaeIII	GTNAC	4 cut(s)	15, 28, 362, 409
MalI	GATC	2 cut(s)	118, 491
MboI	GATC	2 cut(s)	116, 489
MboII	GAAGA	5 cut(s)	84, 148, 151, 213, 431
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	8 cut(s)	229, 240, 243, 252, 274, 325, 328, 495
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	106, 317
MspI	CCGG	2 cut(s)	236, 272
MspR9I	CCNGG	2 cut(s)	378, 432
MvaI	CCWGG	2 cut(s)	378, 432
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	2 cut(s)	116, 489
NlaIII	CATG	2 cut(s)	11, 196
NlaIV	GGNNCC	2 cut(s)	240, 285
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	306, 381, 476
PkrI	GCNGC	2 cut(s)	340, 516
PpuMI	RGGWCCY	1 cut(s)	482
PshBI	ATTAAT	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	376, 430
PspEI	GGTNACC	1 cut(s)	409
PspGI	CCWGG	2 cut(s)	376, 430
PspN4I	GGNNCC	2 cut(s)	240, 285
PspPI	GGNCC	3 cut(s)	319, 445, 482
PspPPI	RGGWCCY	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	489
PvuII	CAGCTG	1 cut(s)	106
SacII	CCGCGG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	2 cut(s)	339, 515
Sau3AI	GATC	2 cut(s)	116, 489
Sau96I	GGNCC	3 cut(s)	319, 445, 482
ScrFI	CCNGG	2 cut(s)	378, 432
SduI	GDGCHC	1 cut(s)	211
Sfr303I	CCGCGG	1 cut(s)	318
SgrBI	CCGCGG	1 cut(s)	318
SinI	GGWCC	3 cut(s)	319, 445, 482
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	3 cut(s)	70, 315, 317
SspMI	CTAG	1 cut(s)	353
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	376, 430
StyI	CCWWGG	2 cut(s)	322, 497
TaaI	ACNGT	1 cut(s)	362
TfiI	GAWTC	3 cut(s)	306, 381, 476
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	2 cut(s)	126, 334
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	338, 514
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	50, 84, 138, 149
TspRI	CASTG	2 cut(s)	126, 334
VpaK11BI	GGWCC	3 cut(s)	319, 445, 482
VspI	ATTAAT	1 cut(s)	504
XceI	RCATGY	1 cut(s)	11
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.