Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

29306824 .. 29311194

Gene Structure 4371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGTCGGGTTAAATTGGAGTTAAAGCGTATAGAGAAGAGCACGAACCGACAAATTACGTTCTCAAAACGTAAAAAAGGTTTAATAAAAAAGGCTTATGAATTGTCAACACTTTGTGACATCGATCTTGCCCTCCTCATGTTCTCTCCCTCTGATCGACTATGTCTCTTTTCCGGTCAAACAAGGATCGAGGACGTTTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAACGCCATAGTTTTCCCTGATCAGAGCAAGCGCCAAGGTATCCAAAACAAAGAGTATTTGTTAAGGACTTTGGAAAAACTCAAAATTGAGGATGACATGGCTCTCCAAATCAACGAACCTCGTCCAGAAGCCACCAACTCCAATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAACAGCTTCAGATATCAGAGGAAGAACTCAGGAAATTCGAACCAGATCCAATGAGGCTAACATCAATGGAGGAGATTGAAGCATGTGAAGCTAACCTCATCAATACGTTGACACGTGTCGTCCAGAGAAGGGAACATTTGTTGAGAAAGTCCTGCGAAGCACAAAGTAACCAACAAAGCATGGACGGGATCCTTCTAAATGACATCGTCGAGGATTGGGGACCTGAGCCCGAGCCCAAACAAGCCCATATGATAGCTAATTCGGCCCATCATTCAAATCAGCCAAGCTATGATTTACTCTTACGCAGGAGTAATTCGAGTTCGAACCAAAATCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

252

Amino Acids

29.24

Weight (kDa)

5.6

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 55	7.9e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	194, 458, 601, 614
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	410
AcvI	CACGTG	1 cut(s)	533
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	547
AflIII	ACRYGT	2 cut(s)	530, 532
AgsI	TTSAA	2 cut(s)	497, 693
AluBI	AGCT	4 cut(s)	424, 509, 674, 705
AluI	AGCT	4 cut(s)	424, 509, 674, 705
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	4 cut(s)	194, 458, 601, 614
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	681
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	638, 682
AsuII	TTCGAA	2 cut(s)	456, 740
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	638
BamHI	GGATCC	1 cut(s)	606
BanII	GRGCYC	2 cut(s)	648, 654
BbrPI	CACGTG	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	44
BccI	CCATC	1 cut(s)	693
BciVI	GTATCC	1 cut(s)	287
BclI	TGATCA	2 cut(s)	223, 256
BcoDI	GTCTC	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	638
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	638, 682
BmiI	GGNNCC	2 cut(s)	608, 639
BoxI	GACNNNNGTC	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	2 cut(s)	456, 740
BpuEI	CTTGAG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	547
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	547
BseMII	CTCAG	2 cut(s)	460, 633
BseRI	GAGGAG	2 cut(s)	125, 503
BshFI	GGCC	1 cut(s)	683
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	1 cut(s)	547
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	1 cut(s)	683
BsoBI	CYCGRG	1 cut(s)	647
Bsp119I	TTCGAA	2 cut(s)	456, 740
Bsp1286I	GDGCHC	3 cut(s)	44, 648, 654
Bsp143I	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	2 cut(s)	459, 634
BspDI	ATCGAT	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	608, 639
BspPI	GGATC	4 cut(s)	194, 458, 601, 614
BspQI	GCTCTTC	1 cut(s)	32
BspT104I	TTCGAA	2 cut(s)	456, 740
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
BssT1I	CCWWGG	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	533
BstBI	TTCGAA	2 cut(s)	456, 740
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	2 cut(s)	446, 642
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	7 cut(s)	127, 157, 189, 226, 259, 466, 609
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 680
BstNSI	RCATGY	1 cut(s)	504
BstPAI	GACNNNNGTC	1 cut(s)	533
BstX2I	RGATCY	2 cut(s)	463, 606
BstYI	RGATCY	2 cut(s)	463, 606
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	683
BsuTUI	ATCGAT	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	638, 682
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	4 cut(s)	139, 334, 501, 598
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	446, 642
DpnI	GATC	7 cut(s)	126, 156, 188, 225, 258, 465, 608
DpnII	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
DraIII	CACNNNGTG	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	648, 654
Eco32I	GATATC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	410
Eco72I	CACGTG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	648, 654
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	4 cut(s)	142, 337, 504, 601
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	4 cut(s)	138, 333, 500, 597
FauNDI	CATATG	1 cut(s)	666
FbaI	TGATCA	2 cut(s)	223, 256
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	2 cut(s)	648, 654
GlaI	GCGC	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	683
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	4 cut(s)	142, 337, 504, 601
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HincII	GTYRAC	2 cut(s)	108, 528
HindII	GTYRAC	2 cut(s)	108, 528
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	108, 528
Hpy188I	TCNGA	4 cut(s)	154, 261, 429, 436
Hpy188III	TCNNGA	5 cut(s)	221, 227, 362, 448, 541
Hpy8I	GTNNAC	2 cut(s)	108, 528
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	2 cut(s)	540, 620
HpyCH4IV	ACGT	5 cut(s)	59, 70, 195, 524, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 680
HpyF3I	CTNAG	2 cut(s)	446, 642
HpySE526I	ACGT	5 cut(s)	59, 70, 195, 524, 532
Hsp92II	CATG	4 cut(s)	142, 337, 504, 601
HspAI	GCGC	1 cut(s)	268
Ksp22I	TGATCA	2 cut(s)	223, 256
Kzo9I	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
LguI	GCTCTTC	1 cut(s)	32
MaeII	ACGT	5 cut(s)	59, 70, 195, 524, 532
MaeIII	GTNAC	2 cut(s)	116, 584
MalI	GATC	7 cut(s)	126, 156, 188, 225, 258, 465, 608
MboI	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
MboII	GAAGA	3 cut(s)	49, 209, 452
MflI	RGATCY	2 cut(s)	463, 606
MhlI	GDGCHC	3 cut(s)	44, 648, 654
MluCI	AATT	7 cut(s)	14, 54, 101, 321, 452, 676, 730
MseI	TTAA	4 cut(s)	12, 23, 83, 299
MspI	CCGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	506, 680
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
NlaIII	CATG	4 cut(s)	142, 337, 504, 601
NlaIV	GGNNCC	2 cut(s)	608, 639
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	504
NspV	TTCGAA	2 cut(s)	456, 740
PciSI	GCTCTTC	1 cut(s)	32
PflFI	GACNNNGTC	2 cut(s)	162, 623
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	533
PpuMI	RGGWCCY	1 cut(s)	638
PshAI	GACNNNNGTC	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	638
PspCI	CACGTG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	608, 639
PspPI	GGNCC	2 cut(s)	638, 682
PspPPI	RGGWCCY	1 cut(s)	638
PsrI	GAACNNNNNNTAC	2 cut(s)	721, 753
PsuI	RGATCY	2 cut(s)	463, 606
PsyI	GACNNNGTC	2 cut(s)	162, 623
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	12, 23, 83, 299
Sau3AI	GATC	7 cut(s)	124, 154, 186, 223, 256, 463, 606
Sau96I	GGNCC	2 cut(s)	638, 682
SduI	GDGCHC	3 cut(s)	44, 648, 654
SfuI	TTCGAA	2 cut(s)	456, 740
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	7 cut(s)	14, 54, 101, 321, 452, 676, 730
StyI	CCWWGG	1 cut(s)	271
TaiI	ACGT	5 cut(s)	62, 73, 198, 527, 535
TaqI	TCGA	8 cut(s)	123, 157, 189, 384, 456, 627, 734, 740
TasI	AATT	7 cut(s)	14, 54, 101, 321, 452, 676, 730
Tru1I	TTAA	4 cut(s)	12, 23, 83, 299
Tru9I	TTAA	4 cut(s)	12, 23, 83, 299
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	114
Tth111I	GACNNNGTC	2 cut(s)	162, 623
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.