Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

21495598 .. 21497525

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1177000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGACTCATTAAGAAAGCTTATGAGCTTTCCTATCCTTTGCGATATTGACATTGCTCTTATCATGTTCTCTCCCTCCGGTCGCCTTAGCCATTTTTCCGGCAAAAGAAGGATTGAGGATGTGTTCACTCGCTACATTAATCTCCCCGACCAAGAAAGAGAGCAGTATTATTTGCTAAGGGTCCTTCAGCAACTAAGAAGTGAAAATGATATTGCTGTACAACTTGCCAAGTTTGTTTTCCTCTTCTGCTTACATGTTATTAGAACTCAATTTGTTCTCAACCTTCTAAAATTAGTAAAGTTCAAGAAAAAAACAAATTTAAAAAACATTTCCTTATTCCTTCAAGTAATTTTGTCTGCTATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

123

Amino Acids

14.39

Weight (kDa)

9.88

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	6 - 32	5.5e-06	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	219
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	304, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	2 cut(s)	19, 27
AluI	AGCT	2 cut(s)	19, 27
ApoI	RAATTY	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	182
Bpu10I	CCTNAGC	2 cut(s)	86, 176
BsaWI	WCCGGW	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	78, 99
Bsp1407I	TGTACA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	86, 176, 194
BstF5I	GGATG	1 cut(s)	124
BstMCI	CGRYCG	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	64, 254
CviJI	RGCY	3 cut(s)	19, 27, 90
CviKI_1	RGCY	3 cut(s)	19, 27, 90
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	3 cut(s)	86, 176, 194
DraI	TTTAAA	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	181
FaeI	CATG	2 cut(s)	67, 257
FaiI	YATR	4 cut(s)	23, 65, 255, 362
FatI	CATG	2 cut(s)	63, 253
FokI	GGATG	1 cut(s)	131
HapII	CCGG	2 cut(s)	78, 99
Hin1II	CATG	2 cut(s)	67, 257
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	78, 99
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	4 cut(s)	102, 194, 293, 350
HpyF3I	CTNAG	3 cut(s)	86, 176, 194
Hsp92II	CATG	2 cut(s)	67, 257
LpnPI	CCDG	2 cut(s)	91, 112
MboII	GAAGA	1 cut(s)	235
MluCI	AATT	5 cut(s)	269, 290, 316, 348, 364
MnlI	CCTC	3 cut(s)	85, 109, 251
MseI	TTAA	3 cut(s)	11, 138, 320
MspI	CCGG	2 cut(s)	78, 99
NlaIII	CATG	2 cut(s)	67, 257
NlaIV	GGNNCC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	257
PciI	ACATGT	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	181
PspPPI	RGGWCCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	11, 138, 320
Sau96I	GGNCC	1 cut(s)	181
SetI	ASST	3 cut(s)	21, 29, 285
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	5 cut(s)	269, 290, 316, 348, 364
TasI	AATT	5 cut(s)	269, 290, 316, 348, 364
TatI	WGTACW	1 cut(s)	217
Tru1I	TTAA	3 cut(s)	11, 138, 320
Tru9I	TTAA	3 cut(s)	11, 138, 320
VpaK11BI	GGWCC	1 cut(s)	181
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.