Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Reverse (-)

65921689 .. 65926583

Gene Structure 4895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21518

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGTCGTGTTAAGCTGGAGATTAAGAGAATAGAAAACAACACCAATCGGCAAGTTACATTCTCAAAGCGCAGAAATGGACTCATTAAAAAAGCCTATGAGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATCATGTTCTCTCCTTCTGGTCGTCTTAGCCACTTTTCCGGCAAAAGAAGGATTGAAGATGTGTTTACTCGTTACATCAATCTCCCAGACCAAGAAAGAGAGCATGCTATAATTTTCCCTGATCACAACAAACATCCTGATCTACAAAACAAAGAGTACTTGCTCAGGATCCTTCAACAACTTCGTAGTGATAATGATTTTGCTCTTCAACTAGCCAATCCTACTGCAGTTAGCTCTGAAATTGAGGAACTTCAACAGGAAATTGGTGGGCTACAACAACAGGTTCGAATGGCGGAAGATCAAATAAGGATATATGAGCCTGACCCACTAAAAATCACATCTATGGCAGAGCTTGAATCATCTGAGAAAAGTCTTGTGGACACCTTGTCGCGTGTTACGCAGAGAAAGGAATATTTGTTGAGTAACCAGCTATCCTCTTTTGATTCATCTGGAATACAGCAAATGTTGCCAGGTTCTTTTGAGAATGAGGTGGCAGGTTGGCTGGCTAACGGTGGTCACAACCACACCCAAATATACGATGCTTCTGCTCCTTTGGATCACCAACTTAGGAACTTGTCGTCGTCACTGTATGATCCTTTTTCACAAGGAACGAGTTCAAATGGTGGAGCAGATCCGAGTAGCATGGGAGAGTGTCATGTGAGTGTTACAAACGGCAGTGATGGAGAGCTTCCTCCTTGGCCTCAGCCATACACATCTTCCGGACACCATTCCACCCTTATGCAACCATCATTGATGCCTCAATATCAGGCAATGGTAAGCTCAAACATGCCAGAAATAATACCACACGAGCAGGTGGAGATTCCAGTTAGCAGCTCCAACGTACAAGCTTACAATGAAGGTGCAGACAATTATCATGATCAAAACAATAAAGTTCCTCAGCTTAATGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

349

Amino Acids

39.23

Weight (kDa)

5.29

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	124 - 192	3.7e-06	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	937
Acc36I	ACCTGC	2 cut(s)	620, 937
AccII	CGCG	1 cut(s)	526
AccIII	TCCGGA	1 cut(s)	854
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	5 cut(s)	298, 311, 699, 722, 761
AfaI	GTAC	2 cut(s)	293, 978
AgsI	TTSAA	6 cut(s)	191, 311, 344, 389, 491, 753
AhdI	GACNNNNNGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	604
AlwI	GGATC	5 cut(s)	298, 311, 699, 722, 761
Aor13HI	TCCGGA	1 cut(s)	854
AoxI	GGCC	1 cut(s)	833
ApeKI	GCWGC	1 cut(s)	966
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	686
AsuII	TTCGAA	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	303
BauI	CACGAG	1 cut(s)	941
BbvCI	CCTCAGC	2 cut(s)	837, 1032
BbvI	GCAGC	1 cut(s)	978
BccI	CCATC	3 cut(s)	116, 809, 889
BceAI	ACGGC	1 cut(s)	823
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	1 cut(s)	606
BclI	TGATCA	2 cut(s)	256, 1012
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	2 cut(s)	620, 937
BisI	GCNGC	1 cut(s)	967
BlsI	GCNGC	1 cut(s)	968
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	606
BmeRI	GACNNNNNGTC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	664, 879
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	3 cut(s)	299, 837, 1032
Bpu14I	TTCGAA	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	830
BsaWI	WCCGGW	1 cut(s)	854
Bse1I	ACTGG	1 cut(s)	959
Bse3DI	GCAATG	2 cut(s)	126, 912
BseAI	TCCGGA	1 cut(s)	854
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	830
BseGI	GGATG	2 cut(s)	108, 268
BseMI	GCAATG	2 cut(s)	126, 912
BseMII	CTCAG	4 cut(s)	313, 489, 851, 1046
BseNI	ACTGG	1 cut(s)	959
BseXI	GCAGC	1 cut(s)	978
BsgI	GTGCAG	1 cut(s)	1017
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	1 cut(s)	835
BsiSI	CCGG	2 cut(s)	174, 855
BsnI	GGCC	1 cut(s)	835
Bsp119I	TTCGAA	1 cut(s)	421
Bsp13I	TCCGGA	1 cut(s)	854
Bsp143I	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	1 cut(s)	835
BspCNI	CTCAG	4 cut(s)	312, 490, 850, 1045
BspEI	TCCGGA	1 cut(s)	854
BspFNI	CGCG	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	1 cut(s)	305
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	2 cut(s)	620, 937
BspPI	GGATC	5 cut(s)	298, 311, 699, 722, 761
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	126, 912
BsrI	ACTGG	1 cut(s)	959
BssECI	CCNNGG	1 cut(s)	830
BssMI	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
BssSI	CACGAG	1 cut(s)	941
BssT1I	CCWWGG	1 cut(s)	830
Bst2BI	CACGAG	1 cut(s)	941
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	647, 723
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	2 cut(s)	240, 639
BstDEI	CTNAG	6 cut(s)	161, 299, 498, 701, 837, 1032
BstF5I	GGATG	2 cut(s)	108, 268
BstFNI	CGCG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	8 cut(s)	259, 277, 306, 436, 694, 730, 769, 1015
BstMBI	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 601
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	2 cut(s)	242, 925
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	978
BstX2I	RGATCY	2 cut(s)	303, 766
BstYI	RGATCY	2 cut(s)	303, 766
BsuRI	GGCC	1 cut(s)	835
BtsCI	GGATG	2 cut(s)	108, 268
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	2 cut(s)	719, 817
BveI	ACCTGC	2 cut(s)	620, 937
Cac8I	GCNNGC	2 cut(s)	240, 639
CciI	TCATGA	1 cut(s)	1009
CfoI	GCGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	292, 977
CviAII	CATG	6 cut(s)	139, 239, 778, 791, 922, 1010
CviQI	GTAC	2 cut(s)	292, 977
DdeI	CTNAG	6 cut(s)	161, 299, 498, 701, 837, 1032
DpnI	GATC	8 cut(s)	258, 276, 305, 435, 693, 729, 768, 1014
DpnII	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
DriI	GACNNNNNGTC	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	830
FaeI	CATG	6 cut(s)	142, 242, 781, 794, 925, 1013
FatI	CATG	6 cut(s)	138, 238, 777, 790, 921, 1009
FbaI	TGATCA	2 cut(s)	256, 1012
Fnu4HI	GCNGC	1 cut(s)	967
FokI	GGATG	2 cut(s)	95, 255
Fsp4HI	GCNGC	1 cut(s)	967
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	967
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	835
HapII	CCGG	2 cut(s)	174, 855
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	6 cut(s)	142, 242, 781, 794, 925, 1013
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	981
HinfI	GANTC	4 cut(s)	81, 491, 578, 955
HpaII	CCGG	2 cut(s)	174, 855
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	201, 514
Hpy188I	TCNGA	3 cut(s)	373, 499, 771
Hpy188III	TCNNGA	5 cut(s)	272, 301, 585, 855, 1010
Hpy8I	GTNNAC	2 cut(s)	201, 514
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	4 cut(s)	159, 177, 317, 986
HpyCH4III	ACNGT	2 cut(s)	647, 723
HpyCH4IV	ACGT	1 cut(s)	975
HpyCH4V	TGCA	3 cut(s)	362, 877, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 601
HpyF3I	CTNAG	6 cut(s)	161, 299, 498, 701, 837, 1032
HpySE526I	ACGT	1 cut(s)	975
Hsp92II	CATG	6 cut(s)	142, 242, 781, 794, 925, 1013
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	854
Ksp22I	TGATCA	2 cut(s)	256, 1012
Kzo9I	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	688, 761, 974
Lsp1109I	GCAGC	1 cut(s)	978
LweI	GCATC	2 cut(s)	664, 879
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	975
MaeIII	GTNAC	8 cut(s)	55, 116, 206, 529, 557, 650, 717, 799
MalI	GATC	8 cut(s)	258, 276, 305, 435, 693, 729, 768, 1014
MboI	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
MboII	GAAGA	4 cut(s)	203, 332, 443, 843
MflI	RGATCY	2 cut(s)	303, 766
MluCI	AATT	4 cut(s)	246, 375, 396, 1003
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	996
MnlI	CCTC	7 cut(s)	373, 580, 616, 837, 846, 903, 1041
MroI	TCCGGA	1 cut(s)	854
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	5 cut(s)	12, 24, 87, 1038, 1048
MslI	CAYNNNNRTG	3 cut(s)	476, 795, 872
MspI	CCGG	2 cut(s)	174, 855
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	2 cut(s)	532, 601
NdeII	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
NlaIII	CATG	6 cut(s)	142, 242, 781, 794, 925, 1013
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	116, 650, 717
NspI	RCATGY	2 cut(s)	242, 925
NspV	TTCGAA	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	1009
PaqCI	CACCTGC	1 cut(s)	937
PciSI	GCTCTTC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	3 cut(s)	491, 578, 955
PkrI	GCNGC	1 cut(s)	968
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	2 cut(s)	303, 766
RsaI	GTAC	2 cut(s)	293, 978
RsaNI	GTAC	2 cut(s)	292, 977
RseI	CAYNNNNRTG	3 cut(s)	476, 795, 872
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	12, 24, 87, 1038, 1048
SatI	GCNGC	1 cut(s)	967
Sau3AI	GATC	8 cut(s)	256, 274, 303, 433, 691, 727, 766, 1012
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	606
SfaNI	GCATC	2 cut(s)	664, 879
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	421
SmiMI	CAYNNNNRTG	3 cut(s)	476, 795, 872
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	4 cut(s)	246, 375, 396, 1003
SsiI	CCGC	1 cut(s)	428
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	2 cut(s)	647, 723
TaiI	ACGT	1 cut(s)	978
TaqI	TCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	246, 375, 396, 1003
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	491, 578, 955
Tru1I	TTAA	5 cut(s)	12, 24, 87, 1038, 1048
Tru9I	TTAA	5 cut(s)	12, 24, 87, 1038, 1048
TscAI	CASTG	2 cut(s)	726, 817
TseFI	GTSAC	3 cut(s)	116, 650, 717
TseI	GCWGC	1 cut(s)	966
Tsp45I	GTSAC	3 cut(s)	116, 650, 717
TspDTI	ATGAA	2 cut(s)	570, 1005
TspRI	CASTG	2 cut(s)	726, 817
XceI	RCATGY	2 cut(s)	242, 925
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.