Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Reverse (-)

43737493 .. 43742707

Gene Structure 5215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1362500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGGTCGTGTTAAGCTGGAGATAAAGAGAATAGAAAACAATACCAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGACTCATTAAGAAAGCTTATGAGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATTATGTTCTCTCCCTCTGGTCGCCTGAGCCATTTTTCTGGCAAAAGAAGGATCGAGGATGTGTTCACTCGCTACATTAATCTCCCCGACCAAGAAAGAGAGCATGCTATAATTTTTCCTGATCACAACAAACATCCTGATCTTCAAAACAAAGAGGTCAGATACATGACATCTAGCAATTATTTGCTCAGGACCCTTCAGCAACTAAGAAGTGAAAATGATATTGCTCTACAACTTGCCAATCCTACAGCCGTTAGCTCTGAAATTGAGGAACTTCAACAGGAAATTGGTGGGCTACAACAACAACTTCAAATGGCTGAGGAGCAGATAAGGATATATGAGCCTGACCCTTTAAAAATCACATCTACGGTGGAGCTTGAATCCTGCGAGAAAAGCCTAATGGACACATTGACGCGTGTTATGCAGAGAAAGGAATATTTGTTGAGTAATCATCTATCTTCCTATGATTCCTCAGGAATACAGCAAGTGTTGCCAGGCTCCTTCGAGAATGAGGTGGCAGGTTGGTTGTCTAGCGCTGGTCACAACCAAGCCCAAATTTACGATGCATCCGCTCCCTTAGAGCATCAACTTAGGAATTTGTCATCGACACTGTATGATCCGTTTTCACAAGGACAGAGCTCGAATGCAGATCCTAGTACCATGGGACAGTGTCATGTGAGCGTCACAAATGACAGTGATGGAGAGCTTCCACTTTGGCATCAGGCTTACACTACTTCCTCAGGACACCACTCCACCCTCATTCCTCCAACCTTGTTGCCACAATATCAGAATTCAGTGGGAGGCTCCAACATGCCAGAAATAATGCCACATGAACAGGTGGAGATCCCAGTTGGCAACTCCAGTATACAACCTTACAACGAAGCTGCAGATTATAATCACGAAAACAAAGTTCCTCAGCTTAATGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

356

Amino Acids

40.11

Weight (kDa)

5.37

Isoelectric Point (pI)

63.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.7e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1029
Acc36I	ACCTGC	1 cut(s)	644
AccBSI	CCGCTC	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	1000
AccII	CGCG	1 cut(s)	550
AciI	CCGC	1 cut(s)	705
AclWI	GGATC	4 cut(s)	194, 746, 779, 973
AcsI	RAATTY	3 cut(s)	690, 730, 925
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	793
AfeI	AGCGCT	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	548
AgsI	TTSAA	4 cut(s)	281, 413, 446, 515
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	9 cut(s)	16, 95, 103, 393, 511, 774, 841, 1019, 1054
AluI	AGCT	9 cut(s)	16, 95, 103, 393, 511, 774, 841, 1019, 1054
Alw21I	GWGCWC	1 cut(s)	776
AlwI	GGATC	4 cut(s)	194, 746, 779, 973
Aor51HI	AGCGCT	1 cut(s)	670
ApeKI	GCWGC	1 cut(s)	1019
ApoI	RAATTY	3 cut(s)	690, 730, 925
AseI	ATTAAT	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	327
AxyI	CCTNAGG	2 cut(s)	607, 874
BanII	GRGCYC	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	776
BbvCI	CCTCAGC	2 cut(s)	453, 1050
BbvI	GCAGC	1 cut(s)	1006
BccI	CCATC	2 cut(s)	116, 827
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	3 cut(s)	309, 666, 789
BfmI	CTRYAG	2 cut(s)	381, 1020
BfoI	RGCGCY	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	644
BisI	GCNGC	1 cut(s)	1020
BlsI	GCNGC	1 cut(s)	1021
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	3 cut(s)	329, 634, 940
BmrFI	CCNGG	1 cut(s)	630
BmrI	ACTGGG	1 cut(s)	977
BmsI	GCATC	4 cut(s)	688, 710, 727, 862
BmuI	ACTGGG	1 cut(s)	977
BpmI	CTGGAG	2 cut(s)	38, 979
Bpu10I	CCTNAGC	4 cut(s)	161, 323, 453, 1050
BsaBI	GATNNNNATC	1 cut(s)	1029
BsaJI	CCNNGG	1 cut(s)	795
Bse1I	ACTGG	2 cut(s)	983, 996
Bse21I	CCTNAGG	2 cut(s)	607, 874
Bse3DI	GCAATG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	795
BseGI	GGATG	4 cut(s)	108, 199, 268, 701
BseJI	GATNNNNATC	1 cut(s)	1029
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	6 cut(s)	152, 337, 444, 621, 888, 1064
BseNI	ACTGG	2 cut(s)	983, 996
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	1 cut(s)	1006
Bsh1236I	CGCG	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	813
BsmFI	GGGAC	1 cut(s)	813
BsmI	GAATGC	1 cut(s)	784
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp143I	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
Bsp19I	CCATGG	1 cut(s)	795
BspACI	CCGC	1 cut(s)	705
BspCNI	CTCAG	6 cut(s)	153, 336, 445, 620, 887, 1063
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	329, 634, 940
BspMAI	CTGCAG	1 cut(s)	1024
BspMI	ACCTGC	1 cut(s)	644
BspPI	GGATC	4 cut(s)	194, 746, 779, 973
BsrBI	CCGCTC	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	983, 996
BssECI	CCNNGG	1 cut(s)	795
BssMI	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
BssNAI	GTATAC	1 cut(s)	1001
BssT1I	CCWWGG	1 cut(s)	795
Bst1107I	GTATAC	1 cut(s)	1001
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	4 cut(s)	505, 747, 804, 830
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	9 cut(s)	161, 323, 341, 453, 607, 712, 725, 874, 1050
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	4 cut(s)	108, 199, 268, 701
BstFNI	CGCG	1 cut(s)	550
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	6 cut(s)	189, 259, 277, 754, 787, 981
BstMBI	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
BstMWI	GCNNNNNNNGC	3 cut(s)	528, 556, 625
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	2 cut(s)	242, 949
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	2 cut(s)	381, 1020
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	1006
BstX2I	RGATCY	2 cut(s)	784, 978
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	2 cut(s)	784, 978
BstZ17I	GTATAC	1 cut(s)	1001
Bsu36I	CCTNAGG	2 cut(s)	607, 874
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	4 cut(s)	108, 199, 268, 701
BtsIMutI	CAGTG	4 cut(s)	743, 809, 835, 936
BveI	ACCTGC	1 cut(s)	644
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	671
Cfr13I	GGNCC	1 cut(s)	327
CseI	GACGC	2 cut(s)	556, 805
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	6 cut(s)	239, 301, 796, 809, 946, 965
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	9 cut(s)	161, 323, 341, 453, 607, 712, 725, 874, 1050
DpnI	GATC	6 cut(s)	188, 258, 276, 753, 786, 980
DpnII	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
DraI	TTTAAA	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	774
Eco130I	CCWWGG	1 cut(s)	795
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	327
Eco47III	AGCGCT	1 cut(s)	670
Eco53kI	GAGCTC	1 cut(s)	774
Eco57I	CTGAAG	1 cut(s)	317
Eco81I	CCTNAGG	2 cut(s)	607, 874
EcoICRI	GAGCTC	1 cut(s)	774
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	925
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	795
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	6 cut(s)	242, 304, 799, 812, 949, 968
FaqI	GGGAC	1 cut(s)	813
FatI	CATG	6 cut(s)	238, 300, 795, 808, 945, 964
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	1000
Fnu4HI	GCNGC	1 cut(s)	1020
FokI	GGATG	4 cut(s)	95, 206, 255, 688
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	1 cut(s)	1020
FspBI	CTAG	3 cut(s)	309, 666, 789
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	1 cut(s)	1020
GsuI	CTGGAG	2 cut(s)	38, 979
HaeII	RGCGCY	1 cut(s)	672
HgaI	GACGC	2 cut(s)	556, 805
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	6 cut(s)	242, 304, 799, 812, 949, 968
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	3 cut(s)	81, 515, 602
Hpy166II	GTNNAC	2 cut(s)	201, 1001
Hpy188I	TCNGA	3 cut(s)	296, 397, 924
Hpy188III	TCNNGA	7 cut(s)	254, 272, 325, 609, 640, 876, 1034
Hpy8I	GTNNAC	2 cut(s)	201, 1001
HpyAV	CCTTC	3 cut(s)	177, 341, 646
HpyCH4III	ACNGT	4 cut(s)	505, 747, 804, 830
HpyCH4V	TGCA	4 cut(s)	559, 701, 782, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	528, 556, 625
HpyF3I	CTNAG	9 cut(s)	161, 323, 341, 453, 607, 712, 725, 874, 1050
Hsp92II	CATG	6 cut(s)	242, 304, 799, 812, 949, 968
HspAI	GCGC	1 cut(s)	669
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
LmnI	GCTCC	5 cut(s)	457, 508, 638, 712, 944
Lsp1109I	GCAGC	1 cut(s)	1006
LweI	GCATC	4 cut(s)	688, 710, 727, 862
MaeI	CTAG	3 cut(s)	309, 666, 789
MaeIII	GTNAC	4 cut(s)	55, 116, 674, 817
MalI	GATC	6 cut(s)	188, 258, 276, 753, 786, 980
MbiI	CCGCTC	1 cut(s)	707
MboI	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
MboII	GAAGA	2 cut(s)	269, 585
MflI	RGATCY	2 cut(s)	784, 978
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	7 cut(s)	246, 313, 399, 420, 690, 730, 925
MluI	ACGCGT	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	2 cut(s)	926, 966
Mph1103I	ATGCAT	1 cut(s)	703
MseI	TTAA	5 cut(s)	12, 87, 213, 488, 1056
MspR9I	CCNGG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	3 cut(s)	528, 556, 625
NcoI	CCATGG	1 cut(s)	795
NdeII	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
NlaIII	CATG	6 cut(s)	242, 304, 799, 812, 949, 968
NlaIV	GGNNCC	3 cut(s)	329, 634, 940
NmuCI	GTSAC	3 cut(s)	116, 674, 817
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	2 cut(s)	242, 949
PaeI	GCATGC	1 cut(s)	242
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	515, 602
PflFI	GACNNNGTC	1 cut(s)	804
PkrI	GCNGC	1 cut(s)	1021
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	327
PshBI	ATTAAT	1 cut(s)	213
PsiI	TTATAA	1 cut(s)	1029
Psp124BI	GAGCTC	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	3 cut(s)	329, 634, 940
PspPI	GGNCC	1 cut(s)	327
PspPPI	RGGWCCY	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	1024
PsuI	RGATCY	2 cut(s)	784, 978
PsyI	GACNNNGTC	1 cut(s)	804
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
SacI	GAGCTC	1 cut(s)	776
SaqAI	TTAA	5 cut(s)	12, 87, 213, 488, 1056
SatI	GCNGC	1 cut(s)	1020
Sau3AI	GATC	6 cut(s)	186, 256, 274, 751, 784, 978
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	4 cut(s)	688, 710, 727, 862
SfcI	CTRYAG	2 cut(s)	381, 1020
SinI	GGWCC	1 cut(s)	327
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	7 cut(s)	246, 313, 399, 420, 690, 730, 925
SsiI	CCGC	1 cut(s)	705
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	3 cut(s)	309, 666, 789
SstI	GAGCTC	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	4 cut(s)	505, 747, 804, 830
TaqI	TCGA	5 cut(s)	49, 189, 639, 740, 776
TasI	AATT	7 cut(s)	246, 313, 399, 420, 690, 730, 925
TfiI	GAWTC	2 cut(s)	515, 602
Tru1I	TTAA	5 cut(s)	12, 87, 213, 488, 1056
Tru9I	TTAA	5 cut(s)	12, 87, 213, 488, 1056
TscAI	CASTG	4 cut(s)	750, 809, 835, 936
TseFI	GTSAC	3 cut(s)	116, 674, 817
TseI	GCWGC	1 cut(s)	1019
Tsp45I	GTSAC	3 cut(s)	116, 674, 817
TspDTI	ATGAA	1 cut(s)	981
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	4 cut(s)	750, 809, 835, 936
Tth111I	GACNNNGTC	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	3 cut(s)	690, 730, 925
XceI	RCATGY	2 cut(s)	242, 949
XmiI	GTMKAC	1 cut(s)	1000
XspI	CTAG	3 cut(s)	309, 666, 789
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.