Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009928.1

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

18800 .. 20639

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009928.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgcagcaaatgttgccaggttcttttgagaatgaggtggcaggttggctggctaacggtggtcacaaccacacccaaatatacgattcttctgctcctttggatcaccaacttaggaacttgtcgtcgtcactatatgatcctttttcacaaggaacgagttcaaatggtggagcagatccgagtagcatgggagagtgtcatgtgagtgttacaaacggcagtgatggagagcttcctccttggcctcagccatacacatcttccggacaccattccacccttatgcaaccatcattgatgcctcaatatcaggcaatggtaagctcaaacatgccagaaataataccacacgagcaggtggagattccagttagcagctccaacgtacaagcttacaatgaaggtgcagacaattatcatgatcaaaacaataaaggaggcttttgtgtgcctcatgaggaagcctctcaaggcttggcactattctggaatgatgacacgcatgtggatttgtgcacgcactcagcaaaccatattgacattataataggcaaaccagggacagatctgtggcacttcactgacatttatggtgtggttgctaggggaggtagagaccggacttggagactaattgaaactttagttgcacaaccatgttcacttcccttgctaatggtaagggactttaatgaaatcatgtgtcatgatgataaaacagggggagtgcctcatgcaatggcagccatggcgaaatttcaaaagactatggctagaaggatgtggttttcttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

266

Amino Acids

29.39

Weight (kDa)

5.18

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	2 cut(s)	32, 349
AccIII	TCCGGA	1 cut(s)	266
AclWI	GGATC	3 cut(s)	111, 134, 173
AcsI	RAATTY	1 cut(s)	758
AfaI	GTAC	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	165, 641, 764
AjnI	CCWGG	2 cut(s)	16, 559
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	4 cut(s)	235, 327, 381, 395
AluI	AGCT	4 cut(s)	235, 327, 381, 395
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	2 cut(s)	612, 625
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	111, 134, 173
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	1 cut(s)	245
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	3 cut(s)	4, 378, 746
ApoI	RAATTY	1 cut(s)	758
Asp700I	GAANNNNTTC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	16, 390, 758
BccI	CCATC	2 cut(s)	221, 301
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	2 cut(s)	18, 561
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	612, 625
BfaI	CTAG	2 cut(s)	606, 777
BfuAI	ACCTGC	2 cut(s)	32, 349
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	3 cut(s)	5, 379, 747
BlsI	GCNGC	3 cut(s)	6, 380, 748
Bme1390I	CCNGG	2 cut(s)	18, 561
BmrFI	CCNGG	2 cut(s)	18, 561
BmsI	GCATC	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	3 cut(s)	242, 560, 750
BsaWI	WCCGGW	2 cut(s)	266, 621
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	2 cut(s)	324, 747
BseAI	TCCGGA	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	18, 561
BseDI	CCNNGG	3 cut(s)	242, 560, 750
BseGI	GGATG	1 cut(s)	789
BseMI	GCAATG	2 cut(s)	324, 747
BseMII	CTCAG	2 cut(s)	263, 540
BseNI	ACTGG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	3 cut(s)	16, 390, 758
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	267, 622
BslFI	GGGAC	2 cut(s)	577, 701
BsmAI	GTCTC	2 cut(s)	612, 625
BsmFI	GGGAC	2 cut(s)	577, 701
BsnI	GGCC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	5 cut(s)	103, 139, 178, 424, 568
Bsp19I	CCATGG	1 cut(s)	750
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	2 cut(s)	262, 539
BspEI	TCCGGA	1 cut(s)	266
BspHI	TCATGA	3 cut(s)	421, 457, 709
BspMI	ACCTGC	2 cut(s)	32, 349
BspPI	GGATC	3 cut(s)	111, 134, 173
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	2 cut(s)	324, 747
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	242, 560, 750
BssMI	GATC	5 cut(s)	103, 139, 178, 424, 568
BssSI	CACGAG	1 cut(s)	353
BssT1I	CCWWGG	2 cut(s)	242, 750
Bst2BI	CACGAG	1 cut(s)	353
Bst2UI	CCWGG	2 cut(s)	18, 561
Bst4CI	ACNGT	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	51, 521
BstDEI	CTNAG	3 cut(s)	113, 249, 526
BstDSI	CCRYGG	1 cut(s)	750
BstF5I	GGATG	1 cut(s)	789
BstKTI	GATC	5 cut(s)	106, 142, 181, 427, 571
BstMAI	GTCTC	2 cut(s)	612, 625
BstMBI	GATC	5 cut(s)	103, 139, 178, 424, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 746, 752
BstNI	CCWGG	2 cut(s)	18, 561
BstNSI	RCATGY	2 cut(s)	337, 509
BstSCI	CCNGG	2 cut(s)	16, 559
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	16, 390, 758
BstX2I	RGATCY	2 cut(s)	178, 568
BstYI	RGATCY	2 cut(s)	178, 568
BsuRI	GGCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	789
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	229, 582
BveI	ACCTGC	2 cut(s)	32, 349
Cac8I	GCNNGC	2 cut(s)	51, 521
CciI	TCATGA	3 cut(s)	421, 457, 709
Csp6I	GTAC	1 cut(s)	389
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	3 cut(s)	113, 249, 526
DpnI	GATC	5 cut(s)	105, 141, 180, 426, 570
DpnII	GATC	5 cut(s)	103, 139, 178, 424, 568
Eco130I	CCWWGG	2 cut(s)	242, 750
Eco31I	GGTCTC	1 cut(s)	612
EcoRII	CCWGG	2 cut(s)	16, 559
EcoT14I	CCWWGG	2 cut(s)	242, 750
ErhI	CCWWGG	2 cut(s)	242, 750
FaqI	GGGAC	2 cut(s)	577, 701
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	5, 379, 747
FokI	GGATG	1 cut(s)	796
Fsp4HI	GCNGC	3 cut(s)	5, 379, 747
FspBI	CTAG	2 cut(s)	606, 777
GluI	GCNGC	3 cut(s)	5, 379, 747
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	2 cut(s)	267, 622
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	2 cut(s)	86, 367
HpaII	CCGG	2 cut(s)	267, 622
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	519, 665
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	5 cut(s)	267, 422, 458, 490, 710
Hpy8I	GTNNAC	2 cut(s)	519, 665
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	398, 774
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	6 cut(s)	4, 289, 410, 519, 653, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 746, 752
HpyF3I	CTNAG	3 cut(s)	113, 249, 526
HpySE526I	ACGT	1 cut(s)	387
Kpn2I	TCCGGA	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	103, 139, 178, 424, 568
LmnI	GCTCC	3 cut(s)	100, 173, 386
Lsp1109I	GCAGC	3 cut(s)	16, 390, 758
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	606, 777
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	62, 129, 211
MalI	GATC	5 cut(s)	105, 141, 180, 426, 570
MboI	GATC	5 cut(s)	103, 139, 178, 424, 568
MboII	GAAGA	2 cut(s)	81, 255
MflI	RGATCY	2 cut(s)	178, 568
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	3 cut(s)	415, 636, 758
MmeI	TCCRAC	1 cut(s)	408
MroI	TCCGGA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	693
MslI	CAYNNNNRTG	4 cut(s)	207, 284, 506, 658
MspI	CCGG	2 cut(s)	267, 622
MspR9I	CCNGG	2 cut(s)	18, 561
MvaI	CCWGG	2 cut(s)	18, 561
MwoI	GCNNNNNNNGC	3 cut(s)	13, 746, 752
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	5 cut(s)	103, 139, 178, 424, 568
NmuCI	GTSAC	2 cut(s)	62, 129
NspI	RCATGY	2 cut(s)	337, 509
OliI	CACNNNNGTG	1 cut(s)	506
PagI	TCATGA	3 cut(s)	421, 457, 709
PaqCI	CACCTGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	86, 367
PkrI	GCNGC	3 cut(s)	6, 380, 748
PsiI	TTATAA	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	16, 559
PspGI	CCWGG	2 cut(s)	16, 559
PsuI	RGATCY	2 cut(s)	178, 568
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	4 cut(s)	207, 284, 506, 658
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	3 cut(s)	5, 379, 747
Sau3AI	GATC	5 cut(s)	103, 139, 178, 424, 568
ScrFI	CCNGG	2 cut(s)	18, 561
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	291
SmiMI	CAYNNNNRTG	4 cut(s)	207, 284, 506, 658
SmlI	CTYRAG	1 cut(s)	471
SmoI	CTYRAG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	415, 636, 758
SspMI	CTAG	2 cut(s)	606, 777
StyD4I	CCNGG	2 cut(s)	16, 559
StyI	CCWWGG	2 cut(s)	242, 750
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	1 cut(s)	390
TasI	AATT	3 cut(s)	415, 636, 758
TfiI	GAWTC	2 cut(s)	86, 367
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	2 cut(s)	229, 589
TseFI	GTSAC	2 cut(s)	62, 129
TseI	GCWGC	3 cut(s)	4, 378, 746
Tsp45I	GTSAC	2 cut(s)	62, 129
TspDTI	ATGAA	2 cut(s)	417, 711
TspRI	CASTG	2 cut(s)	229, 589
VneI	GTGCAC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	758
XceI	RCATGY	2 cut(s)	337, 509
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	2 cut(s)	606, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.