Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

36451923 .. 36456732

Gene Structure 4810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0332700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAATGGCTTGCCTTCAACCTTCTTCATGGCTCTCTTCCCGACCCACTCTCTTTCCCTCCTCCTCCTCCTCCTCAAAGCCCCACCCTTCGAAGCTCTTCTTTTCTCTCACCCCACCCAATCCCAATCCCAATCCCAATCCCAATGCTGAATCCGAAACCACGACGTCCCCAGTCGACCCGCCAAGTCCTGGGAATGCCGAATTGCCTGCTGCTGTTAAGACTGCAATGGAGAGAGCTAGAGAGTATAAGCAGAAGAAGAAAGGGACTAACAAAACTTCAGGTGTTGAAGAAGCAAATGAGAAAAACAAGGGAAAATTGTCAGTGTCGAGCATGGATTTTGTGGGACTTGGGTTTGCCGATAAGAAGGAGGGTAGAGCACTGCCAGCTGGGTTGGTTCCAATCGCAGACGATTTTGCTCAGGGCAACTTGCCTGAGGTTGAGATTATTGTTGGGGACTCCAGTAATTTCGGTGCGCCCACACCCAAGCCTCAAGGAGATGACCCCCCGGATGATCTTTACAAGCCAAAGGTTTCTTCATGGGGAGTCTTTCCCAGACCCAATGACATTTCAAAAACGTTTGGTGGTGGGCGAGTTATACGCCCCGGGGAAGTGCTTGAAACGCAGGAAGAAAAAGCTGCTAAAGAGGAACGAACAAGACAATTAGTTGCTGCTTACAAGAGTAAAATGGGCTTGAACATTGATCCCAAGCTCAGATTGGACTGTGAGAAGACATTAAAGGATGGTGACTCATTGATGAATGTCGGAAAGCTGAAGGAAGCATTACCCTACTATGAGAAAGTTATGGATAAGTTACCATTCAAGAGTGAGCTTCATGGGGTGGCTGCTTTACAGTGGTCTATTTGTCAAGATTCCCTGAGACAAAAGAAGCTCGAAATATGTATGAGAGGCTTCAATCCCACCCAACTGCTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

312

Amino Acids

34.04

Weight (kDa)

8.49

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	1 cut(s)	182
AclI	AACGTT	1 cut(s)	578
AclWI	GGATC	1 cut(s)	698
AcuI	CTGAAG	2 cut(s)	264, 794
AcyI	GRCGYC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	7 cut(s)	20, 290, 573, 620, 697, 823, 916
AjnI	CCWGG	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	520, 552
AluBI	AGCT	8 cut(s)	97, 239, 389, 638, 712, 772, 832, 892
AluI	AGCT	8 cut(s)	97, 239, 389, 638, 712, 772, 832, 892
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	874
AlwI	GGATC	1 cut(s)	698
Ama87I	CYCGRG	1 cut(s)	605
ApeKI	GCWGC	4 cut(s)	212, 638, 671, 845
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	478
AsuC2I	CCSGG	3 cut(s)	509, 606, 607
AsuHPI	GGTGA	2 cut(s)	103, 758
AsuII	TTCGAA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	605
AxyI	CCTNAGG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	4 cut(s)	199, 625, 658, 832
BccI	CCATC	1 cut(s)	737
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	3 cut(s)	509, 606, 607
BcoDI	GTCTC	1 cut(s)	874
BfaI	CTAG	2 cut(s)	240, 932
BisI	GCNGC	4 cut(s)	213, 639, 672, 846
BlsI	GCNGC	4 cut(s)	214, 640, 673, 847
Bme1390I	CCNGG	4 cut(s)	192, 509, 606, 607
BmeT110I	CYCGRG	1 cut(s)	605
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	4 cut(s)	192, 509, 606, 607
BmrI	ACTGGG	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	445
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	477
BpuMI	CCSGG	3 cut(s)	509, 606, 607
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	5 cut(s)	191, 507, 604, 605, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	173, 462
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	2 cut(s)	12, 234
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	5 cut(s)	191, 507, 604, 605, 606
BseGI	GGATG	2 cut(s)	517, 748
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	2 cut(s)	12, 234
BseMII	CTCAG	4 cut(s)	426, 434, 727, 869
BseNI	ACTGG	2 cut(s)	173, 462
BseRI	GAGGAG	5 cut(s)	52, 55, 58, 61, 64
BseXI	GCAGC	4 cut(s)	199, 625, 658, 832
BseYI	CCCAGC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	2 cut(s)	509, 606
BslFI	GGGAC	4 cut(s)	154, 280, 360, 470
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	874
BsmFI	GGGAC	4 cut(s)	154, 280, 360, 470
BsmI	GAATGC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	605
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	514, 703
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	4 cut(s)	427, 433, 726, 870
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	698
BspQI	GCTCTTC	1 cut(s)	104
BspT104I	TTCGAA	1 cut(s)	92
BsrDI	GCAATG	2 cut(s)	12, 234
BsrI	ACTGG	2 cut(s)	173, 462
BssECI	CCNNGG	5 cut(s)	191, 507, 604, 605, 606
BssMI	GATC	2 cut(s)	514, 703
BssNI	GRCGYC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	725, 855
Bst6I	CTCTTC	2 cut(s)	43, 104
BstACI	GRCGYC	1 cut(s)	167
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	13, 210, 387
BstDEI	CTNAG	4 cut(s)	420, 435, 713, 878
BstF5I	GGATG	2 cut(s)	517, 748
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	2 cut(s)	517, 706
BstMAI	GTCTC	1 cut(s)	874
BstMBI	GATC	2 cut(s)	514, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 622
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	4 cut(s)	190, 507, 604, 605
BstV1I	GCAGC	4 cut(s)	199, 625, 658, 832
BstV2I	GAAGAC	1 cut(s)	737
Bsu36I	CCTNAGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	517, 748
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	330, 380, 860
Cac8I	GCNNGC	3 cut(s)	13, 210, 387
CfoI	GCGC	1 cut(s)	478
Cfr9I	CCCGGG	1 cut(s)	605
CviAII	CATG	4 cut(s)	30, 334, 540, 836
DdeI	CTNAG	4 cut(s)	420, 435, 713, 878
DpnI	GATC	2 cut(s)	516, 705
DpnII	GATC	2 cut(s)	514, 703
Eam1104I	CTCTTC	2 cut(s)	43, 104
EarI	CTCTTC	2 cut(s)	43, 104
Eco57I	CTGAAG	2 cut(s)	264, 794
Eco81I	CCTNAGG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	4 cut(s)	33, 337, 543, 839
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	4 cut(s)	154, 280, 360, 470
FatI	CATG	4 cut(s)	29, 333, 539, 835
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	213, 639, 672, 846
FokI	GGATG	2 cut(s)	524, 755
Fsp4HI	GCNGC	4 cut(s)	213, 639, 672, 846
FspBI	CTAG	2 cut(s)	240, 932
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	4 cut(s)	213, 639, 672, 846
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	445
HapII	CCGG	2 cut(s)	509, 606
HhaI	GCGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	4 cut(s)	33, 337, 543, 839
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	5 cut(s)	152, 458, 546, 749, 872
HpaII	CCGG	2 cut(s)	509, 606
HphI	GGTGA	2 cut(s)	103, 758
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	157, 716, 767
Hpy188III	TCNNGA	3 cut(s)	42, 823, 869
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	5 cut(s)	26, 33, 99, 361, 769
HpyCH4III	ACNGT	2 cut(s)	725, 855
HpyCH4IV	ACGT	2 cut(s)	167, 578
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 622
HpyF3I	CTNAG	4 cut(s)	420, 435, 713, 878
HpySE526I	ACGT	2 cut(s)	167, 578
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	33, 337, 543, 839
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	514, 703
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	4 cut(s)	199, 625, 658, 832
MaeI	CTAG	2 cut(s)	240, 932
MaeII	ACGT	2 cut(s)	167, 578
MaeIII	GTNAC	2 cut(s)	746, 813
MalI	GATC	2 cut(s)	516, 705
MboI	GATC	2 cut(s)	514, 703
MboII	GAAGA	9 cut(s)	18, 30, 91, 268, 271, 302, 528, 641, 742
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	4 cut(s)	203, 317, 466, 662
MlyI	GAGTC	3 cut(s)	452, 555, 743
MmeI	TCCRAC	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	219, 737
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	509, 606
MspR9I	CCNGG	4 cut(s)	192, 509, 606, 607
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	386, 622
NciI	CCSGG	3 cut(s)	509, 606, 607
NdeII	GATC	2 cut(s)	514, 703
NlaIII	CATG	4 cut(s)	33, 337, 543, 839
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	746
NspV	TTCGAA	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	152, 872
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	214, 640, 673, 847
PleI	GAGTC	3 cut(s)	452, 554, 743
PpsI	GAGTC	3 cut(s)	452, 554, 743
Psp1406I	AACGTT	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	399
PvuII	CAGCTG	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	219, 737
SatI	GCNGC	4 cut(s)	213, 639, 672, 846
Sau3AI	GATC	2 cut(s)	514, 703
SchI	GAGTC	3 cut(s)	452, 555, 743
ScrFI	CCNGG	4 cut(s)	192, 509, 606, 607
SduI	GDGCHC	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	92
SmaI	CCCGGG	1 cut(s)	607
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	4 cut(s)	203, 317, 466, 662
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	240, 932
StyD4I	CCNGG	4 cut(s)	190, 507, 604, 605
TaaI	ACNGT	2 cut(s)	725, 855
TaiI	ACGT	2 cut(s)	170, 581
TaqI	TCGA	4 cut(s)	92, 177, 329, 894
TasI	AATT	4 cut(s)	203, 317, 466, 662
TfiI	GAWTC	2 cut(s)	152, 872
Tru1I	TTAA	2 cut(s)	219, 737
Tru9I	TTAA	2 cut(s)	219, 737
TscAI	CASTG	3 cut(s)	330, 387, 860
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	4 cut(s)	212, 638, 671, 845
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	4 cut(s)	18, 528, 773, 824
TspMI	CCCGGG	1 cut(s)	605
TspRI	CASTG	3 cut(s)	330, 387, 860
Van91I	CCANNNNNTGG	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XmaI	CCCGGG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	240, 932
ZraI	GACGTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.