Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

21497596 .. 21500291

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1177100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACACGTTGACGAGTGTTATGCAGAGAAAGGAATATTTGTTGAGCAATCATCTATCTTCCTATGATCCCTCAGGAATACAGCAAGTGTTGCCAGGCTCCTTCGAGAATGAGGTGGCAGGTTGGTTGAATTTGTCATCGACACTGTATGATCCATTTTCACAAGGACCAAGTTCGAATGCAGATCCAAGTACCATGGCACAGTGTCATGTGAGTGTCACAAATGCTAGTGATGGAGAACTTTCATCTTGGCCTCAGGCTTACACTACTTCATCAGGACACCCCTCCACCCTCATTTCTCCAACCTTGTTGCCACAATATCAGCATTCGATGGTAGGCTCCAACATGGCAGAAATAATGCCACATGAGCAGGTGGAGATCCCAGTTAGCAGCTCCAGTGTACAAGCTTACAATGAAGCTGCAGATTATAATCATGAAAACAAAGTTCCTCAGCTTAATGGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

156

Amino Acids

16.84

Weight (kDa)

4.58

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	2 cut(s)	110, 361
AclWI	GGATC	4 cut(s)	62, 146, 179, 373
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	193, 402
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	4 cut(s)	393, 407, 419, 454
AluI	AGCT	4 cut(s)	393, 407, 419, 454
AlwI	GGATC	4 cut(s)	62, 146, 179, 373
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	390, 419
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	167
AxyI	CCTNAGG	2 cut(s)	73, 255
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	402, 406
BccI	CCATC	2 cut(s)	227, 325
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	228
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	2 cut(s)	110, 361
BisI	GCNGC	2 cut(s)	391, 420
BlsI	GCNGC	2 cut(s)	392, 421
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	100, 340
BmrFI	CCNGG	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	377
BmuI	ACTGGG	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	383, 396
Bse21I	CCTNAGG	2 cut(s)	73, 255
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	87, 269, 464
BseNI	ACTGG	2 cut(s)	383, 396
BseXI	GCAGC	2 cut(s)	402, 406
BshFI	GGCC	1 cut(s)	253
BsmI	GAATGC	2 cut(s)	184, 325
BsnI	GGCC	1 cut(s)	253
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	67, 151, 184, 378
Bsp19I	CCATGG	1 cut(s)	195
BspANI	GGCC	1 cut(s)	253
BspCNI	CTCAG	3 cut(s)	86, 268, 463
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	100, 340
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	2 cut(s)	110, 361
BspPI	GGATC	4 cut(s)	62, 146, 179, 373
BspT104I	TTCGAA	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	2 cut(s)	383, 396
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	4 cut(s)	67, 151, 184, 378
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	147, 204
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	400
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	3 cut(s)	73, 255, 450
BstDSI	CCRYGG	1 cut(s)	195
BstKTI	GATC	4 cut(s)	70, 154, 187, 381
BstMBI	GATC	4 cut(s)	67, 151, 184, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 367
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	402, 406
BstX2I	RGATCY	2 cut(s)	184, 378
BstYI	RGATCY	2 cut(s)	184, 378
Bsu36I	CCTNAGG	2 cut(s)	73, 255
BsuRI	GGCC	1 cut(s)	253
BtgI	CCRYGG	1 cut(s)	195
BtsIMutI	CAGTG	3 cut(s)	143, 209, 403
BveI	ACCTGC	2 cut(s)	110, 361
CciI	TCATGA	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	192, 401
CviAII	CATG	5 cut(s)	196, 209, 346, 365, 434
CviJI	RGCY	8 cut(s)	99, 253, 260, 339, 393, 407, 419, 454
CviKI_1	RGCY	8 cut(s)	99, 253, 260, 339, 393, 407, 419, 454
CviQI	GTAC	2 cut(s)	192, 401
DdeI	CTNAG	3 cut(s)	73, 255, 450
DpnI	GATC	4 cut(s)	69, 153, 186, 380
DpnII	GATC	4 cut(s)	67, 151, 184, 378
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	167
Eco81I	CCTNAGG	2 cut(s)	73, 255
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	199, 212, 349, 368, 437
FaiI	YATR	9 cut(s)	23, 66, 150, 197, 210, 347, 366, 429, 435
FatI	CATG	5 cut(s)	195, 208, 345, 364, 433
Fnu4HI	GCNGC	2 cut(s)	391, 420
Fsp4HI	GCNGC	2 cut(s)	391, 420
FspBI	CTAG	1 cut(s)	228
GluI	GCNGC	2 cut(s)	391, 420
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	253
Hin1II	CATG	5 cut(s)	199, 212, 349, 368, 437
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	405
Hpy166II	GTNNAC	2 cut(s)	12, 401
Hpy188III	TCNNGA	4 cut(s)	75, 106, 276, 434
Hpy8I	GTNNAC	2 cut(s)	12, 401
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	147, 204
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	25, 182, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 367
HpyF3I	CTNAG	3 cut(s)	73, 255, 450
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	5 cut(s)	199, 212, 349, 368, 437
Kzo9I	GATC	4 cut(s)	67, 151, 184, 378
LmnI	GCTCC	3 cut(s)	104, 344, 398
LpnPI	CCDG	9 cut(s)	60, 81, 105, 108, 242, 261, 356, 396, 409
Lsp1109I	GCAGC	2 cut(s)	402, 406
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	69, 153, 186, 380
MboI	GATC	4 cut(s)	67, 151, 184, 378
MboII	GAAGA	1 cut(s)	51
MflI	RGATCY	2 cut(s)	184, 378
MluCI	AATT	1 cut(s)	130
MmeI	TCCRAC	2 cut(s)	326, 366
MnlI	CCTC	6 cut(s)	82, 106, 264, 295, 302, 459
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	2 cut(s)	184, 325
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	91, 367
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	67, 151, 184, 378
NlaIII	CATG	5 cut(s)	199, 212, 349, 368, 437
NlaIV	GGNNCC	2 cut(s)	100, 340
NmuCI	GTSAC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	176
PagI	TCATGA	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	361
PctI	GAATGC	2 cut(s)	184, 325
PkrI	GCNGC	2 cut(s)	392, 421
PsiI	TTATAA	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	100, 340
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	184, 378
RsaI	GTAC	2 cut(s)	193, 402
RsaNI	GTAC	2 cut(s)	192, 401
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	2 cut(s)	391, 420
Sau3AI	GATC	4 cut(s)	67, 151, 184, 378
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	9 cut(s)	11, 117, 124, 308, 375, 395, 409, 421, 456
SfcI	CTRYAG	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	1 cut(s)	130
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	147, 204
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	4 cut(s)	105, 140, 176, 329
TasI	AATT	1 cut(s)	130
TatI	WGTACW	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	3 cut(s)	150, 209, 403
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	390, 419
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	234, 261, 429, 450
TspRI	CASTG	3 cut(s)	150, 209, 403
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	130
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.