Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Reverse (-)

67426559 .. 67430643

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG471800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTCGTGTTAAGCTGGAGATTAAGAGAATAGAAAACAACACCAATCGGCAAGTTACATTCTCAAAGCGCAGAAATGGACTCATTAAAAAAGCCTATGAGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATCATGTTCTCTCCTTCTGGTCGTCTTAGCCACTTTTCCGGCAAAAGAAGGATTGAAGATGTGTTTACTCGTTACATCAATCTCCCAGACCAAGAAAGAGAGCATGCTATAATTTTCCCTGATCACAACAAACATCCTGATCTACAAAACAAAGAGGTCAGATATATGGCATGTAGCAATGTACTCTATTTTATTTTATCTTGTTGTTTCTCAATTATTCTCGAGATAATTCTAAATGATCGAAAACGTATATATACGATGTTGTTTGTTTTCTTGCAGTACTTGCTCAGGACCCTTCAACAACTTCGTAGTGATAATAATTTTGCTCTTCAACTAGCCAATCCTACTGCAGTTAGCTCTGAAATTGAGGAACTTCAACAGGAAATTGGTGGGCTACAACAACAGGTTCGAATGGCGGAAGATCAAATAAGGATATATGAGCCTGACCCACTAAAAATCACATCTATGGCAGAGCTTGAATCATCTGAGAAAAGTCTTGTGGACACCTTGTCGCGTGTTACGCAGAGAAAGGAATATTTGTTGAGTAACCAGCTATCTTCTTTTGATTCATCTGGAATACAGCAAATGTTGCCAGGTTCTTTTGAGAATGAGGTCGCAGGTTGGCTGGCTAACGGTGGTCACAACCACACCCAAATATACGATGCTTCTGCTCCTTTGGATCACCAACTTAGGAACTTGTCGTCGTCACTGTATGATCCTTTTTCACAAGGAACGAGTTCAAATGGTGGAGCAGATCCGAGTAGCATGGGAGAGTGTCATGTGAGTGTTACAAACGGCAGTGATGGAGAGCTTCCTCCTTGGCCTCAGCCATACACATCTTCCGGACACCATTCCACCCTTATGCAACCATCATTGATACCTCAATATCAGCAGGCAATGGTAAGCTCAAACATGCCAGAAATAATACCACACGAGCAGGTGGAGATTCCAGTTAGCAGCTCCAACGTACAAGCTTACAATGAAGGTGCAGACAATTATCATGATCAAAACAATAAAGTTCCTCAGCTTAATGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

391

Amino Acids

44.26

Weight (kDa)

5.55

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	165 - 233	4.4e-06	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1063
Acc36I	ACCTGC	2 cut(s)	743, 1063
AccII	CGCG	1 cut(s)	649
AccIII	TCCGGA	1 cut(s)	977
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	3 cut(s)	822, 845, 884
AfaI	GTAC	3 cut(s)	318, 416, 1104
AgsI	TTSAA	6 cut(s)	191, 434, 467, 512, 614, 876
AhdI	GACNNNNNGTC	1 cut(s)	643
AjnI	CCWGG	1 cut(s)	727
AlwI	GGATC	3 cut(s)	822, 845, 884
Ama87I	CYCGRG	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	977
AoxI	GGCC	1 cut(s)	956
ApeKI	GCWGC	1 cut(s)	1092
Asp700I	GAANNNNTTC	1 cut(s)	871
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	809
AsuII	TTCGAA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	426
BauI	CACGAG	1 cut(s)	1067
BbvCI	CCTCAGC	2 cut(s)	960, 1158
BbvI	GCAGC	1 cut(s)	1104
BccI	CCATC	3 cut(s)	116, 932, 1012
BceAI	ACGGC	1 cut(s)	946
BcgI	CGANNNNNNTGC	2 cut(s)	785, 819
BciT130I	CCWGG	1 cut(s)	729
BclI	TGATCA	2 cut(s)	256, 1138
BfaI	CTAG	1 cut(s)	470
BfmI	CTRYAG	1 cut(s)	483
BfuAI	ACCTGC	2 cut(s)	743, 1063
BisI	GCNGC	1 cut(s)	1093
BlsI	GCNGC	1 cut(s)	1094
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	1 cut(s)	426
BmeRI	GACNNNNNGTC	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	3 cut(s)	422, 960, 1158
Bpu14I	TTCGAA	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	953
BsaWI	WCCGGW	1 cut(s)	977
Bse1I	ACTGG	1 cut(s)	1085
Bse3DI	GCAATG	3 cut(s)	126, 319, 1038
BseAI	TCCGGA	1 cut(s)	977
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	953
BseGI	GGATG	2 cut(s)	108, 268
BseMI	GCAATG	3 cut(s)	126, 319, 1038
BseMII	CTCAG	4 cut(s)	436, 612, 974, 1172
BseNI	ACTGG	1 cut(s)	1085
BseXI	GCAGC	1 cut(s)	1104
BsgI	GTGCAG	1 cut(s)	1143
Bsh1236I	CGCG	1 cut(s)	649
BshFI	GGCC	1 cut(s)	958
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	174, 978
BsnI	GGCC	1 cut(s)	958
BsoBI	CYCGRG	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	977
Bsp143I	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	4 cut(s)	435, 613, 973, 1171
BspEI	TCCGGA	1 cut(s)	977
BspFNI	CGCG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	1135
BspLI	GGNNCC	1 cut(s)	428
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	2 cut(s)	743, 1063
BspPI	GGATC	3 cut(s)	822, 845, 884
BspQI	GCTCTTC	1 cut(s)	468
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	3 cut(s)	126, 319, 1038
BsrI	ACTGG	1 cut(s)	1085
BssECI	CCNNGG	1 cut(s)	953
BssMI	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
BssSI	CACGAG	1 cut(s)	1067
BssT1I	CCWWGG	1 cut(s)	953
Bst2BI	CACGAG	1 cut(s)	1067
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	2 cut(s)	770, 846
Bst6I	CTCTTC	1 cut(s)	468
BstAPI	GCANNNNNTGC	2 cut(s)	418, 724
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	240, 762, 1029
BstDEI	CTNAG	6 cut(s)	161, 422, 621, 824, 960, 1158
BstF5I	GGATG	2 cut(s)	108, 268
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	8 cut(s)	259, 277, 376, 559, 817, 853, 892, 1141
BstMBI	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
BstMWI	GCNNNNNNNGC	3 cut(s)	418, 655, 724
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	3 cut(s)	242, 309, 1051
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	1104
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
BsuRI	GGCC	1 cut(s)	958
BtsCI	GGATG	2 cut(s)	108, 268
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	2 cut(s)	842, 940
BveI	ACCTGC	2 cut(s)	743, 1063
Cac8I	GCNNGC	3 cut(s)	240, 762, 1029
CciI	TCATGA	1 cut(s)	1135
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	426
Csp6I	GTAC	3 cut(s)	317, 415, 1103
CviAII	CATG	7 cut(s)	139, 239, 306, 901, 914, 1048, 1136
CviQI	GTAC	3 cut(s)	317, 415, 1103
DdeI	CTNAG	6 cut(s)	161, 422, 621, 824, 960, 1158
DpnI	GATC	8 cut(s)	258, 276, 375, 558, 816, 852, 891, 1140
DpnII	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
DriI	GACNNNNNGTC	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	468
Eam1105I	GACNNNNNGTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	1 cut(s)	566
Eco130I	CCWWGG	1 cut(s)	953
Eco47I	GGWCC	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	953
ErhI	CCWWGG	1 cut(s)	953
FaeI	CATG	7 cut(s)	142, 242, 309, 904, 917, 1051, 1139
FatI	CATG	7 cut(s)	138, 238, 305, 900, 913, 1047, 1135
FbaI	TGATCA	2 cut(s)	256, 1138
Fnu4HI	GCNGC	1 cut(s)	1093
FokI	GGATG	2 cut(s)	95, 255
Fsp4HI	GCNGC	1 cut(s)	1093
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	1093
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	958
HapII	CCGG	2 cut(s)	174, 978
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	7 cut(s)	142, 242, 309, 904, 917, 1051, 1139
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	1107
HinfI	GANTC	4 cut(s)	81, 614, 701, 1081
HpaII	CCGG	2 cut(s)	174, 978
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	2 cut(s)	201, 637
Hpy188I	TCNGA	4 cut(s)	296, 496, 622, 894
Hpy188III	TCNNGA	7 cut(s)	272, 356, 358, 424, 708, 978, 1136
Hpy8I	GTNNAC	2 cut(s)	201, 637
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	4 cut(s)	159, 177, 440, 1112
HpyCH4III	ACNGT	2 cut(s)	770, 846
HpyCH4IV	ACGT	2 cut(s)	382, 1101
HpyCH4V	TGCA	4 cut(s)	412, 485, 1000, 1124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	418, 655, 724
HpyF3I	CTNAG	6 cut(s)	161, 422, 621, 824, 960, 1158
HpySE526I	ACGT	2 cut(s)	382, 1101
Hsp92II	CATG	7 cut(s)	142, 242, 309, 904, 917, 1051, 1139
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	977
Ksp22I	TGATCA	2 cut(s)	256, 1138
Kzo9I	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	3 cut(s)	811, 884, 1100
Lsp1109I	GCAGC	1 cut(s)	1104
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	2 cut(s)	382, 1101
MaeIII	GTNAC	8 cut(s)	55, 116, 206, 652, 680, 773, 840, 922
MalI	GATC	8 cut(s)	258, 276, 375, 558, 816, 852, 891, 1140
MboI	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
MboII	GAAGA	5 cut(s)	203, 455, 566, 684, 966
MflI	RGATCY	1 cut(s)	889
MluCI	AATT	7 cut(s)	246, 348, 363, 454, 498, 519, 1129
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	1122
MnlI	CCTC	7 cut(s)	283, 496, 739, 960, 969, 1026, 1167
MroI	TCCGGA	1 cut(s)	977
MroXI	GAANNNNTTC	1 cut(s)	871
MseI	TTAA	5 cut(s)	12, 24, 87, 1164, 1174
MslI	CAYNNNNRTG	3 cut(s)	599, 918, 995
MspI	CCGG	2 cut(s)	174, 978
MspR9I	CCNGG	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	729
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	3 cut(s)	418, 655, 724
NdeII	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
NlaIII	CATG	7 cut(s)	142, 242, 309, 904, 917, 1051, 1139
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	3 cut(s)	116, 773, 840
NspI	RCATGY	3 cut(s)	242, 309, 1051
NspV	TTCGAA	1 cut(s)	544
PaeI	GCATGC	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	1135
PaqCI	CACCTGC	1 cut(s)	1063
PciSI	GCTCTTC	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	3 cut(s)	614, 701, 1081
PkrI	GCNGC	1 cut(s)	1094
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	426
PspPPI	RGGWCCY	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	889
RsaI	GTAC	3 cut(s)	318, 416, 1104
RsaNI	GTAC	3 cut(s)	317, 415, 1103
RseI	CAYNNNNRTG	3 cut(s)	599, 918, 995
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	5 cut(s)	12, 24, 87, 1164, 1174
SatI	GCNGC	1 cut(s)	1093
Sau3AI	GATC	8 cut(s)	256, 274, 373, 556, 814, 850, 889, 1138
Sau96I	GGNCC	1 cut(s)	426
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	729
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	426
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	3 cut(s)	599, 918, 995
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	7 cut(s)	246, 348, 363, 454, 498, 519, 1129
SsiI	CCGC	1 cut(s)	551
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	1 cut(s)	953
TaaI	ACNGT	2 cut(s)	770, 846
TaiI	ACGT	2 cut(s)	385, 1104
TaqI	TCGA	3 cut(s)	357, 376, 544
TasI	AATT	7 cut(s)	246, 348, 363, 454, 498, 519, 1129
TatI	WGTACW	2 cut(s)	316, 414
TfiI	GAWTC	3 cut(s)	614, 701, 1081
Tru1I	TTAA	5 cut(s)	12, 24, 87, 1164, 1174
Tru9I	TTAA	5 cut(s)	12, 24, 87, 1164, 1174
TscAI	CASTG	2 cut(s)	849, 940
TseFI	GTSAC	3 cut(s)	116, 773, 840
TseI	GCWGC	1 cut(s)	1092
Tsp45I	GTSAC	3 cut(s)	116, 773, 840
TspDTI	ATGAA	2 cut(s)	693, 1131
TspRI	CASTG	2 cut(s)	849, 940
VpaK11BI	GGWCC	1 cut(s)	426
XceI	RCATGY	3 cut(s)	242, 309, 1051
XhoI	CTCGAG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	871
XspI	CTAG	1 cut(s)	470
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.