Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Reverse (-)

29314841 .. 29317186

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGTCGAGTGAAATTGGAGATAAAACGAATAGAAAACACAACGAATCGACAAGTTACATTCTCCAAAAGACGAAATGGTCTTATAAAGAAAGCTTATGAATTGTCCATTCTTTGTGACATCGACATTGCTCTCCTCATGTTCTCTCCCTCTGATCGCCTTAGCCTCTTTTCGGGCAAAACAAGGATTGAAGACGTTTTCTCTAGATACATCAATCTTTCTGATCAAGAACGAGAGAATGCTCTAGTATTCCCCGATCAAAGTCGACGCCCAGATTTCCAGAGCAAAGAGTATCTACTCCGGACTTTGCAGCAACTCAAGGCTGAGAATGATATTGCTCTTCAACTTACCAACCCTACAGCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAACAACAACTTCTCATGGCAGAGGAAGAACTAAGGAAATACGAACCAGATCCAATCAGGTTTACAACAATGGAAGAGTACGAAACTTGTGAGAAGCAGCTCATGGACACCTTAACACGTGTCAATCAACGACGGGAACATATATTGAGTCAAGACCAATTATCTTCATATGAAGCATCTGCTTTACAACAACAGCAAAGCATGGGTGGGCCTTTTGGAAACGACGTCGTTGGAGGATGGCTGACTGAAAATGGGCCTAACGAAGCCCATTTATTCGACGCATCGGCACATTCAGCAATGTATGAAACTTTATTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATGGGTGAATCCAATGTGTCAAATCATAACGGTGACATGTTTCAAGAATGGGCCCAAGCCTATAATTCTACTACGGCCCATAACCCTTCGACTCTATTTCCTCCTATGCAGCATCAGCATGGACTGGTGGTTGATCCCAATATAGAAGAAATTGAAATACCGGTTATGAAGAAGGATGCACAAGCAGACCACGAGGTCTCCGACTATGATATAAGAATGCCTCAGCTCAGTAGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

332

Amino Acids

38.05

Weight (kDa)

4.85

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 55	1.5e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	86, 402
AasI	GACNNNNNNGTC	2 cut(s)	78, 953
AatII	GACGTC	2 cut(s)	378, 636
AccI	GTMKAC	1 cut(s)	265
AccIII	TCCGGA	1 cut(s)	300
AclWI	GGATC	2 cut(s)	452, 887
AcvI	CACGTG	1 cut(s)	527
AcyI	GRCGYC	3 cut(s)	268, 375, 633
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	3 cut(s)	524, 526, 795
AgeI	ACCGGT	1 cut(s)	919
AgsI	TTSAA	4 cut(s)	191, 344, 803, 914
AluBI	AGCT	6 cut(s)	95, 362, 508, 735, 741, 985
AluI	AGCT	6 cut(s)	95, 362, 508, 735, 741, 985
Alw26I	GTCTC	1 cut(s)	961
AlwI	GGATC	2 cut(s)	452, 887
Aor13HI	TCCGGA	1 cut(s)	300
AoxI	GGCC	4 cut(s)	617, 662, 810, 834
ApaI	GGGCCC	1 cut(s)	814
ApeKI	GCWGC	3 cut(s)	310, 505, 868
AsiGI	ACCGGT	1 cut(s)	919
AspS9I	GGNCC	5 cut(s)	617, 662, 810, 811, 835
AsuHPI	GGTGA	2 cut(s)	776, 803
BaeGI	GKGCMC	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	814
BauI	CACGAG	1 cut(s)	950
BbrPI	CACGTG	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	981
BbvI	GCAGC	3 cut(s)	322, 517, 880
BccI	CCATC	1 cut(s)	639
BceAI	ACGGC	1 cut(s)	849
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	961
BfaI	CTAG	2 cut(s)	204, 245
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	3 cut(s)	311, 506, 869
BlsI	GCNGC	3 cut(s)	312, 507, 870
BmgT120I	GGNCC	5 cut(s)	617, 662, 810, 811, 835
BmiI	GGNNCC	1 cut(s)	812
BmsI	GCATC	4 cut(s)	593, 698, 880, 925
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	2 cut(s)	161, 981
BpuEI	CTTGAG	3 cut(s)	302, 407, 721
BsaAI	YACGTR	1 cut(s)	527
BsaHI	GRCGYC	3 cut(s)	268, 375, 633
BsaI	GGTCTC	1 cut(s)	961
BsaWI	WCCGGW	2 cut(s)	300, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	919
Bse1I	ACTGG	1 cut(s)	888
Bse3DI	GCAATG	2 cut(s)	126, 711
BseAI	TCCGGA	1 cut(s)	300
BseGI	GGATG	2 cut(s)	650, 940
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	2 cut(s)	126, 711
BseMII	CTCAG	2 cut(s)	315, 995
BseNI	ACTGG	1 cut(s)	888
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	3 cut(s)	322, 517, 880
BshFI	GGCC	4 cut(s)	619, 664, 812, 836
BshTI	ACCGGT	1 cut(s)	919
BsiSI	CCGG	2 cut(s)	301, 920
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	961
BsmI	GAATGC	2 cut(s)	244, 981
BsnI	GGCC	4 cut(s)	619, 664, 812, 836
Bso31I	GGTCTC	1 cut(s)	961
Bsp120I	GGGCCC	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp13I	TCCGGA	1 cut(s)	300
Bsp143I	GATC	5 cut(s)	154, 223, 256, 457, 892
BspANI	GGCC	4 cut(s)	619, 664, 812, 836
BspCNI	CTCAG	3 cut(s)	316, 994, 999
BspEI	TCCGGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	812
BspPI	GGATC	2 cut(s)	452, 887
BspQI	GCTCTTC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	961
BsrDI	GCAATG	2 cut(s)	126, 711
BsrFI	RCCGGY	1 cut(s)	919
BsrI	ACTGG	1 cut(s)	888
BssAI	RCCGGY	1 cut(s)	919
BssMI	GATC	5 cut(s)	154, 223, 256, 457, 892
BssNI	GRCGYC	3 cut(s)	268, 375, 633
BssSI	CACGAG	1 cut(s)	950
Bst2BI	CACGAG	1 cut(s)	950
Bst4CI	ACNGT	1 cut(s)	791
Bst6I	CTCTTC	2 cut(s)	345, 477
BstACI	GRCGYC	3 cut(s)	268, 375, 633
BstBAI	YACGTR	1 cut(s)	527
BstDEI	CTNAG	5 cut(s)	161, 324, 440, 981, 986
BstF5I	GGATG	2 cut(s)	650, 940
BstKTI	GATC	5 cut(s)	157, 226, 259, 460, 895
BstMAI	GTCTC	1 cut(s)	961
BstMBI	GATC	5 cut(s)	154, 223, 256, 457, 892
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 874
BstNSI	RCATGY	1 cut(s)	799
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	814
BstV1I	GCAGC	3 cut(s)	322, 517, 880
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	619, 664, 812, 836
BtsCI	GGATG	2 cut(s)	650, 940
Cfr10I	RCCGGY	1 cut(s)	919
Cfr13I	GGNCC	5 cut(s)	617, 662, 810, 811, 835
CseI	GACGC	2 cut(s)	276, 695
Csp6I	GTAC	1 cut(s)	487
CspAI	ACCGGT	1 cut(s)	919
CviAII	CATG	7 cut(s)	139, 392, 424, 511, 610, 796, 878
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	5 cut(s)	161, 324, 440, 981, 986
DpnI	GATC	5 cut(s)	156, 225, 258, 459, 894
DpnII	GATC	5 cut(s)	154, 223, 256, 457, 892
DrdI	GACNNNNNNGTC	2 cut(s)	78, 953
DseDI	GACNNNNNNGTC	2 cut(s)	78, 953
Eam1104I	CTCTTC	2 cut(s)	345, 477
EarI	CTCTTC	2 cut(s)	345, 477
Eco24I	GRGCYC	1 cut(s)	814
Eco31I	GGTCTC	1 cut(s)	961
Eco72I	CACGTG	1 cut(s)	527
EcoT38I	GRGCYC	1 cut(s)	814
FaeI	CATG	7 cut(s)	142, 395, 427, 514, 613, 799, 881
FatI	CATG	7 cut(s)	138, 391, 423, 510, 609, 795, 877
FauNDI	CATATG	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	223
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	311, 506, 869
FokI	GGATG	2 cut(s)	657, 947
FriOI	GRGCYC	1 cut(s)	814
Fsp4HI	GCNGC	3 cut(s)	311, 506, 869
FspBI	CTAG	2 cut(s)	204, 245
GluI	GCNGC	3 cut(s)	311, 506, 869
HaeIII	GGCC	4 cut(s)	619, 664, 812, 836
HapII	CCGG	2 cut(s)	301, 920
HgaI	GACGC	2 cut(s)	276, 695
Hin1I	GRCGYC	3 cut(s)	268, 375, 633
Hin1II	CATG	7 cut(s)	142, 395, 427, 514, 613, 799, 881
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	4 cut(s)	46, 556, 767, 850
HpaII	CCGG	2 cut(s)	301, 920
HphI	GGTGA	2 cut(s)	776, 803
Hpy166II	GTNNAC	2 cut(s)	266, 471
Hpy188I	TCNGA	4 cut(s)	154, 223, 373, 961
Hpy188III	TCNNGA	6 cut(s)	204, 227, 280, 301, 560, 803
Hpy8I	GTNNAC	2 cut(s)	266, 471
Hpy99I	CGWCG	7 cut(s)	270, 377, 380, 543, 635, 638, 689
HpyAV	CCTTC	2 cut(s)	855, 925
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4IV	ACGT	4 cut(s)	195, 375, 526, 633
HpyCH4V	TGCA	4 cut(s)	310, 724, 868, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 874
HpyF3I	CTNAG	5 cut(s)	161, 324, 440, 981, 986
HpySE526I	ACGT	4 cut(s)	195, 375, 526, 633
Hsp92I	GRCGYC	3 cut(s)	268, 375, 633
Hsp92II	CATG	7 cut(s)	142, 395, 427, 514, 613, 799, 881
Kpn2I	TCCGGA	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	154, 223, 256, 457, 892
LguI	GCTCTTC	1 cut(s)	345
LpnPI	CCDG	7 cut(s)	285, 293, 314, 451, 468, 869, 933
Lsp1109I	GCAGC	3 cut(s)	322, 517, 880
LweI	GCATC	4 cut(s)	593, 698, 880, 925
MaeI	CTAG	2 cut(s)	204, 245
MaeII	ACGT	4 cut(s)	195, 375, 526, 633
MaeIII	GTNAC	4 cut(s)	55, 116, 405, 791
MalI	GATC	5 cut(s)	156, 225, 258, 459, 894
MboI	GATC	5 cut(s)	154, 223, 256, 457, 892
MboII	GAAGA	7 cut(s)	203, 332, 446, 494, 564, 917, 940
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	814
MluCI	AATT	5 cut(s)	14, 101, 566, 823, 909
MlyI	GAGTC	2 cut(s)	565, 844
MmeI	TCCRAC	3 cut(s)	396, 619, 984
MnlI	CCTC	9 cut(s)	146, 160, 176, 373, 424, 635, 870, 946, 990
MroI	TCCGGA	1 cut(s)	300
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	2 cut(s)	789, 876
MspI	CCGG	2 cut(s)	301, 920
Mva1269I	GAATGC	2 cut(s)	244, 981
MwoI	GCNNNNNNNGC	2 cut(s)	701, 874
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	154, 223, 256, 457, 892
NlaIII	CATG	7 cut(s)	142, 395, 427, 514, 613, 799, 881
NlaIV	GGNNCC	1 cut(s)	812
NmuCI	GTSAC	2 cut(s)	116, 791
NspI	RCATGY	1 cut(s)	799
PciI	ACATGT	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PctI	GAATGC	2 cut(s)	244, 981
PfeI	GAWTC	2 cut(s)	46, 767
PinAI	ACCGGT	1 cut(s)	919
PkrI	GCNGC	3 cut(s)	312, 507, 870
PleI	GAGTC	2 cut(s)	564, 844
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
PpsI	GAGTC	2 cut(s)	564, 844
Ppu21I	YACGTR	1 cut(s)	527
PscI	ACATGT	1 cut(s)	795
PsiI	TTATAA	2 cut(s)	86, 402
PspCI	CACGTG	1 cut(s)	527
PspN4I	GGNNCC	1 cut(s)	812
PspOMI	GGGCCC	1 cut(s)	810
PspPI	GGNCC	5 cut(s)	617, 662, 810, 811, 835
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	2 cut(s)	789, 876
SalI	GTCGAC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	3 cut(s)	311, 506, 869
Sau3AI	GATC	5 cut(s)	154, 223, 256, 457, 892
Sau96I	GGNCC	5 cut(s)	617, 662, 810, 811, 835
SchI	GAGTC	2 cut(s)	565, 844
SduI	GDGCHC	1 cut(s)	814
SfaNI	GCATC	4 cut(s)	593, 698, 880, 925
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	789, 876
SmlI	CTYRAG	3 cut(s)	317, 386, 736
SmoI	CTYRAG	3 cut(s)	317, 386, 736
Sse9I	AATT	5 cut(s)	14, 101, 566, 823, 909
SspMI	CTAG	2 cut(s)	204, 245
TaaI	ACNGT	1 cut(s)	791
TaiI	ACGT	4 cut(s)	198, 378, 529, 636
TaqI	TCGA	8 cut(s)	7, 49, 123, 265, 378, 684, 743, 848
TasI	AATT	5 cut(s)	14, 101, 566, 823, 909
TfiI	GAWTC	2 cut(s)	46, 767
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TseFI	GTSAC	2 cut(s)	116, 791
TseI	GCWGC	3 cut(s)	310, 505, 868
Tsp45I	GTSAC	2 cut(s)	116, 791
TspDTI	ATGAA	6 cut(s)	114, 408, 564, 594, 726, 941
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	799
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	2 cut(s)	204, 245
ZraI	GACGTC	2 cut(s)	376, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.