Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

63686225 .. 63697828

Gene Structure 11604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGATCATTTTAAGCTAGAGATTAAGAGAATAGAAAACAACACCAATCGGCAAGTTACATTCTCAAAGCGCAGATATGGACTCATTAAAAAAGCCTATGTGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATCATGTTCTCTCCTTCTGGTCGTCTTTGCCACTTTTCCGGCAAAAGAAGGATTGAAGATGTGTTTACTCGTTATATCAATCTCCCAGACCAAAGAAAGAGAGCATACTGGGCCACCGATATTTGGTGCCTTGGAAACGCAAAGGCACCAATGAAGCCCATCAGTGCCAAAATGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

104

Amino Acids

12.24

Weight (kDa)

9.91

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.5e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	261, 280
AclWI	GGATC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	261, 280
BccI	CCATC	2 cut(s)	116, 302
BfaI	CTAG	2 cut(s)	17, 313
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	263, 282
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	2 cut(s)	261, 280
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	258
BsnI	GGCC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	263, 282
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	261, 280
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	246
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	4 cut(s)	16, 95, 248, 292
CviKI_1	RGCY	4 cut(s)	16, 95, 248, 292
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	1 cut(s)	142
FaiI	YATR	5 cut(s)	78, 99, 140, 210, 241
FatI	CATG	1 cut(s)	138
FokI	GGATG	1 cut(s)	95
FspBI	CTAG	2 cut(s)	17, 313
GlaI	GCGC	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	159, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	138, 187, 229, 234
MaeI	CTAG	2 cut(s)	17, 313
MaeIII	GTNAC	2 cut(s)	55, 116
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	203
MlyI	GAGTC	1 cut(s)	75
MseI	TTAA	3 cut(s)	12, 24, 87
MspI	CCGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	263, 282
NmuCI	GTSAC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	263, 282
PspPI	GGNCC	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	12, 24, 87
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	75
SetI	ASST	1 cut(s)	18
SgeI	CNNG	9 cut(s)	29, 65, 151, 165, 186, 216, 233, 256, 278
SspMI	CTAG	2 cut(s)	17, 313
StyI	CCWWGG	1 cut(s)	265
Tru1I	TTAA	3 cut(s)	12, 24, 87
Tru9I	TTAA	3 cut(s)	12, 24, 87
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	304
XspI	CTAG	2 cut(s)	17, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.