Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Reverse (-)

17798377 .. 17799267

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0113100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAGTCGACCAACTCTAGTTCAGCACCGGCCAGAATAAAGGAGAAGCAGCCAAGGCTGCCTAAGCTCGGGAAAGAAAAAACGCAGAAGACTCGACAAAAAATATTCAAGAATCGATGGTCGACGCTGAAGAGGAAAGCAAAACACCTTGCTTCCCTATGCAATGGCCAGGTCTGCATGGTTATGTTTGGATCCAATGGCATTGTCGAGGTTTGGCCAAATCCAGGAAACCCAGCCGCGGCTGAAGCTATCATGATAAAGTACTTGGAAGCTCATAATAAACATAGCTTTATTCGCAAGAAGCTGGAGCTTAACCTTTCCGATTTTTCGGAAATCCAGAAAACGGGAGCAGTTGATACTGGAAGAGGGTTTAAGAGTCATCACAAGGGTTTTGCAGTGTGCCAGGAGGAATTTGGCAGGTTTTCAAGGGACTCAGGGATGGATTTATCTGTATACTTGAAGTCCAAGGTACAGAAGTTGGATAAGACAATTAGATCAATTGAGGTAACGAATCCTATTTACATGAATCAGGCTAATGGATATTTTGGGACAGTAGAGAGTTCTGGTCAGATATCGGAGAATATTTATAGCAACAACGATTTTAACTACGATAGCTTTTGTCCATGGGGATTTTCGGATTGCCACAACAATCCATATGAAGGTATATATGGTACTACTACACCAAATTCTGGACAATCTGTGATATCGAACGCAAACTCAATAGGTTTCGCAGCGGTAGAGAACAATATGCACCAACAAAGAACACAGAATATTAATGGCTTTGGAGAAACAGATCTTCTTTCTCATCATGATCAGCATCAGCAGTTTATGGAGGTTCCTCAATCACATCCATTTCATTTTAATGAAGTACCAATTTCATTGTGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

296

Amino Acids

33.39

Weight (kDa)

9.07

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	29 - 71	2.1e-08	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccI	GTMKAC	3 cut(s)	8, 122, 453
AccII	CGCG	1 cut(s)	239
AciI	CCGC	3 cut(s)	237, 239, 734
AclWI	GGATC	2 cut(s)	186, 199
AcoI	YGGCCR	3 cut(s)	30, 166, 215
AcsI	RAATTY	2 cut(s)	410, 685
AcuI	CTGAAG	2 cut(s)	149, 264
AfaI	GTAC	4 cut(s)	263, 471, 673, 870
AfiI	CCNNNNNNNGG	6 cut(s)	68, 224, 238, 343, 659, 689
AgsI	TTSAA	3 cut(s)	109, 426, 460
AjnI	CCWGG	3 cut(s)	168, 223, 402
AluBI	AGCT	7 cut(s)	67, 248, 272, 288, 304, 310, 615
AluI	AGCT	7 cut(s)	67, 248, 272, 288, 304, 310, 615
AlwI	GGATC	2 cut(s)	186, 199
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	3 cut(s)	30, 166, 215
ApeKI	GCWGC	3 cut(s)	49, 58, 731
ApoI	RAATTY	2 cut(s)	410, 685
AseI	ATTAAT	1 cut(s)	774
AvaI	CYCGRG	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	461, 494
BalI	TGGCCA	2 cut(s)	168, 217
BamHI	GGATCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	45, 61, 743
BccI	CCATC	2 cut(s)	111, 433
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	3 cut(s)	170, 225, 404
BclI	TGATCA	1 cut(s)	811
BfaI	CTAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	408
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	5 cut(s)	50, 59, 237, 240, 732
BlsI	GCNGC	5 cut(s)	51, 60, 238, 241, 733
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	170, 225, 404
BmeT110I	CYCGRG	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	193, 837
BmrFI	CCNGG	3 cut(s)	170, 225, 404
BmsI	GCATC	1 cut(s)	826
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	816
BsaJI	CCNNGG	4 cut(s)	53, 237, 465, 623
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 224, 238, 343, 659, 689
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	816
BseBI	CCWGG	3 cut(s)	170, 225, 404
BseCI	ATCGAT	1 cut(s)	115
BseDI	CCNNGG	4 cut(s)	53, 237, 465, 623
BseGI	GGATG	2 cut(s)	444, 847
BseJI	GATNNNNATC	1 cut(s)	816
BseLI	CCNNNNNNNGG	6 cut(s)	68, 224, 238, 343, 659, 689
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	45, 61, 743
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	3 cut(s)	32, 168, 217
BshVI	ATCGAT	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	443, 562
BslI	CCNNNNNNNGG	6 cut(s)	68, 224, 238, 343, 659, 689
BsmFI	GGGAC	2 cut(s)	443, 562
BsnI	GGCC	3 cut(s)	32, 168, 217
BsoBI	CYCGRG	1 cut(s)	68
Bsp143I	GATC	4 cut(s)	191, 494, 793, 811
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	3 cut(s)	237, 239, 734
BspANI	GGCC	3 cut(s)	32, 168, 217
BspCNI	CTCAG	1 cut(s)	446
BspDI	ATCGAT	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	2 cut(s)	252, 808
BspLI	GGNNCC	2 cut(s)	193, 837
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	186, 199
BsrDI	GCAATG	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	4 cut(s)	53, 237, 465, 623
BssMI	GATC	4 cut(s)	191, 494, 793, 811
BssNAI	GTATAC	1 cut(s)	454
BssT1I	CCWWGG	3 cut(s)	53, 465, 623
Bst1107I	GTATAC	1 cut(s)	454
Bst2UI	CCWGG	3 cut(s)	170, 225, 404
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	2 cut(s)	125, 358
BstDEI	CTNAG	2 cut(s)	63, 433
BstDSI	CCRYGG	2 cut(s)	237, 623
BstF5I	GGATG	2 cut(s)	444, 847
BstFNI	CGCG	1 cut(s)	239
BstKTI	GATC	4 cut(s)	194, 497, 796, 814
BstMBI	GATC	4 cut(s)	191, 494, 793, 811
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 58, 64, 174, 245, 294
BstNI	CCWGG	3 cut(s)	170, 225, 404
BstSCI	CCNGG	3 cut(s)	168, 223, 402
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	45, 61, 743
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	191, 793
BstYI	RGATCY	2 cut(s)	191, 793
BstZ17I	GTATAC	1 cut(s)	454
Bsu15I	ATCGAT	1 cut(s)	115
BsuRI	GGCC	3 cut(s)	32, 168, 217
BsuTUI	ATCGAT	1 cut(s)	115
BtgI	CCRYGG	2 cut(s)	237, 623
BtsCI	GGATG	2 cut(s)	444, 847
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	408
CciI	TCATGA	2 cut(s)	252, 808
Cfr10I	RCCGGY	1 cut(s)	28
Cfr42I	CCGCGG	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	115
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	262, 470, 672, 869
CviAII	CATG	5 cut(s)	178, 253, 523, 624, 809
CviQI	GTAC	4 cut(s)	262, 470, 672, 869
DdeI	CTNAG	2 cut(s)	63, 433
DpnI	GATC	4 cut(s)	193, 496, 795, 813
DpnII	GATC	4 cut(s)	191, 494, 793, 811
EaeI	YGGCCR	3 cut(s)	30, 166, 215
Eam1104I	CTCTTC	2 cut(s)	125, 358
EarI	CTCTTC	2 cut(s)	125, 358
Eco130I	CCWWGG	3 cut(s)	53, 465, 623
Eco32I	GATATC	2 cut(s)	573, 705
Eco57I	CTGAAG	2 cut(s)	149, 264
Eco88I	CYCGRG	1 cut(s)	68
EcoRII	CCWGG	3 cut(s)	168, 223, 402
EcoRV	GATATC	2 cut(s)	573, 705
EcoT14I	CCWWGG	3 cut(s)	53, 465, 623
ErhI	CCWWGG	3 cut(s)	53, 465, 623
FaeI	CATG	5 cut(s)	181, 256, 526, 627, 812
FaqI	GGGAC	2 cut(s)	443, 562
FatI	CATG	5 cut(s)	177, 252, 522, 623, 808
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	3 cut(s)	8, 122, 453
Fnu4HI	GCNGC	5 cut(s)	50, 59, 237, 240, 732
FokI	GGATG	2 cut(s)	451, 834
Fsp4HI	GCNGC	5 cut(s)	50, 59, 237, 240, 732
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	5 cut(s)	50, 59, 237, 240, 732
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	32, 168, 217
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	133
Hin1II	CATG	5 cut(s)	181, 256, 526, 627, 812
HincII	GTYRAC	2 cut(s)	9, 123
HindII	GTYRAC	2 cut(s)	9, 123
HinfI	GANTC	6 cut(s)	91, 112, 376, 431, 511, 526
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	9, 123, 454
Hpy188I	TCNGA	5 cut(s)	322, 331, 570, 577, 637
Hpy188III	TCNNGA	7 cut(s)	70, 109, 253, 337, 690, 809, 888
Hpy8I	GTNNAC	3 cut(s)	9, 123, 454
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4V	TGCA	4 cut(s)	162, 177, 395, 751
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 58, 64, 174, 245, 294
HpyF3I	CTNAG	2 cut(s)	63, 433
Hsp92II	CATG	5 cut(s)	181, 256, 526, 627, 812
Ksp22I	TGATCA	1 cut(s)	811
KspI	CCGCGG	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	191, 494, 793, 811
LmnI	GCTCC	2 cut(s)	307, 347
Lsp1109I	GCAGC	3 cut(s)	45, 61, 743
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	4 cut(s)	193, 496, 795, 813
MboI	GATC	4 cut(s)	191, 494, 793, 811
MboII	GAAGA	4 cut(s)	100, 142, 375, 788
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	191, 793
MlsI	TGGCCA	2 cut(s)	168, 217
MluCI	AATT	5 cut(s)	410, 489, 498, 685, 873
MluNI	TGGCCA	2 cut(s)	168, 217
MlyI	GAGTC	3 cut(s)	85, 385, 425
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	7 cut(s)	126, 202, 359, 400, 496, 826, 849
Mox20I	TGGCCA	2 cut(s)	168, 217
MscI	TGGCCA	2 cut(s)	168, 217
MseI	TTAA	5 cut(s)	312, 372, 603, 774, 861
MslI	CAYNNNNRTG	2 cut(s)	182, 861
Msp20I	TGGCCA	2 cut(s)	168, 217
MspA1I	CMGCKG	2 cut(s)	239, 734
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	3 cut(s)	170, 225, 404
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	3 cut(s)	170, 225, 404
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	6 cut(s)	55, 58, 64, 174, 245, 294
NcoI	CCATGG	1 cut(s)	623
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	4 cut(s)	191, 494, 793, 811
NlaIII	CATG	5 cut(s)	181, 256, 526, 627, 812
NlaIV	GGNNCC	2 cut(s)	193, 837
PagI	TCATGA	2 cut(s)	252, 808
PfeI	GAWTC	3 cut(s)	112, 511, 526
PflMI	CCANNNNNTGG	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	51, 60, 238, 241, 733
PleI	GAGTC	3 cut(s)	85, 384, 425
PpsI	GAGTC	3 cut(s)	85, 384, 425
PshBI	ATTAAT	1 cut(s)	774
Psp6I	CCWGG	3 cut(s)	168, 223, 402
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	3 cut(s)	168, 223, 402
PspN4I	GGNNCC	2 cut(s)	193, 837
PsuI	RGATCY	2 cut(s)	191, 793
RsaI	GTAC	4 cut(s)	263, 471, 673, 870
RsaNI	GTAC	4 cut(s)	262, 470, 672, 869
RseI	CAYNNNNRTG	2 cut(s)	182, 861
SacII	CCGCGG	1 cut(s)	240
SalI	GTCGAC	2 cut(s)	7, 121
SaqAI	TTAA	5 cut(s)	312, 372, 603, 774, 861
SatI	GCNGC	5 cut(s)	50, 59, 237, 240, 732
Sau3AI	GATC	4 cut(s)	191, 494, 793, 811
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	3 cut(s)	85, 385, 425
ScrFI	CCNGG	3 cut(s)	170, 225, 404
SfaNI	GCATC	1 cut(s)	826
Sfr303I	CCGCGG	1 cut(s)	240
SgrBI	CCGCGG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	182, 861
Sse9I	AATT	5 cut(s)	410, 489, 498, 685, 873
SsiI	CCGC	3 cut(s)	237, 239, 734
SspI	AATATT	3 cut(s)	105, 583, 772
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	168, 223, 402
StyI	CCWWGG	3 cut(s)	53, 465, 623
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	6 cut(s)	8, 94, 115, 122, 207, 707
TasI	AATT	5 cut(s)	410, 489, 498, 685, 873
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	239, 242
TfiI	GAWTC	3 cut(s)	112, 511, 526
Tru1I	TTAA	5 cut(s)	312, 372, 603, 774, 861
Tru9I	TTAA	5 cut(s)	312, 372, 603, 774, 861
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	3 cut(s)	49, 58, 731
TspDTI	ATGAA	6 cut(s)	17, 539, 672, 845, 867, 879
TspRI	CASTG	1 cut(s)	402
Van91I	CCANNNNNTGG	1 cut(s)	689
VspI	ATTAAT	1 cut(s)	774
XapI	RAATTY	2 cut(s)	410, 685
XcmI	CCANNNNNNNNNTGG	2 cut(s)	410, 879
XmiI	GTMKAC	3 cut(s)	8, 122, 453
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.