Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

4172027 .. 4175617

Gene Structure 3591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000708

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGTCGTGTTAAGCTGGAGATTAAAAGAATAGAAAACAACACCAATCGGCAAGTTACATTCTCAAAGCGCAGAAATGGACTCATTAAAAAAGCCTATGAGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATCATGTTCTCTCCTTCTGGTCGTCTTAGCCACTTTTCCGGCAAAAGAAGGATCGAAGATGTGTTTACTCGTTACATCAATCTCCCAGACCAAGAAAGAGAGCATGCTATAATTTTCCCTGATCACAACAAACATCCTGATCTACAAAACAAAGAGGTCAGATATATGGCATGTAGCAATTACTTGCTCAGGACCCTTCAACAACTTCGTAGTGACAATGATATTGTTTTTCAACTAGCCAATCCTACTGCAGTTAGCTCTGAACTTGAGGAACTTCAACAGGAAATTGGTGGGCTACAACAACAGGTTCGAATGGTGGAAGATCAAATAAGGATATATGAGCCTGACCCACTAAAAATCACATCTATGGCAGAGCTTGAATCATCTGAGAAAAGTCTTGTGGACACCTTGTCTCGTGTTACGCAGAGAAAGGAATATTTGTTGAGTAACCAGCTATCCTCTTTTGATTCATCTGGAATACAGCAAATGTTGCCAGGTTCTTTTGAGAATGAGGTGGCAGGTTGGCTGGCTAACGGTGGTCACAACCACACCCAAATATACGATGCTTCTGCTCCTTTGGATCACCAACTTAGGAGCTTGTCGTCGTCACTGTATGATCCTTTTTCACAAGGAACGAATTCAAATGGTGGAGCAGATCCGAGTAGCATGGGAGAGTGTCATGTGAGTGTTACAAACGGCAGTGATGGAGAGCTTCCTCCTTGGCCTCAGCCATACACATCTTCCGGACACCATTCCACCCTTATGCAACCATCATTGATGCCTCAATATCAGCAGGCAATGGTAAGCTCAAACATGCCAGAAATAATACCACACGAGCAGGTGGAGATTCCAGTTAGCAGCTCCAACGTACAAGCTTACAATGAAGGTGCAGACAATTATCATGATCAAAACAATAAAGTTCCTCAGCTTAATGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

359

Amino Acids

40.32

Weight (kDa)

5.37

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.7e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	131 - 200	1.9e-06	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	964
Acc36I	ACCTGC	2 cut(s)	644, 964
AccIII	TCCGGA	1 cut(s)	878
AclWI	GGATC	4 cut(s)	194, 723, 746, 785
AcsI	RAATTY	1 cut(s)	772
AfaI	GTAC	1 cut(s)	1005
AgsI	TTSAA	5 cut(s)	335, 368, 413, 515, 777
AhdI	GACNNNNNGTC	1 cut(s)	544
AjnI	CCWGG	1 cut(s)	628
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	4 cut(s)	194, 723, 746, 785
Aor13HI	TCCGGA	1 cut(s)	878
AoxI	GGCC	1 cut(s)	857
ApeKI	GCWGC	1 cut(s)	993
ApoI	RAATTY	1 cut(s)	772
Asp700I	GAANNNNTTC	1 cut(s)	772
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	710
AsuII	TTCGAA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	327
BauI	CACGAG	2 cut(s)	549, 968
BbvCI	CCTCAGC	2 cut(s)	861, 1059
BbvI	GCAGC	1 cut(s)	1005
BccI	CCATC	3 cut(s)	116, 833, 913
BceAI	ACGGC	1 cut(s)	847
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	2 cut(s)	256, 1039
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	2 cut(s)	644, 964
BisI	GCNGC	1 cut(s)	994
BlsI	GCNGC	1 cut(s)	995
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	2 cut(s)	688, 903
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	3 cut(s)	323, 861, 1059
Bpu14I	TTCGAA	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	854
BsaWI	WCCGGW	1 cut(s)	878
Bse1I	ACTGG	1 cut(s)	986
Bse3DI	GCAATG	2 cut(s)	126, 939
BseAI	TCCGGA	1 cut(s)	878
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	2 cut(s)	108, 268
BseMI	GCAATG	2 cut(s)	126, 939
BseMII	CTCAG	4 cut(s)	337, 513, 875, 1073
BseNI	ACTGG	1 cut(s)	986
BseXI	GCAGC	1 cut(s)	1005
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	1 cut(s)	859
BsiSI	CCGG	2 cut(s)	174, 879
BsmAI	GTCTC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	859
Bsp119I	TTCGAA	1 cut(s)	445
Bsp13I	TCCGGA	1 cut(s)	878
Bsp143I	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
BspANI	GGCC	1 cut(s)	859
BspCNI	CTCAG	4 cut(s)	336, 514, 874, 1072
BspEI	TCCGGA	1 cut(s)	878
BspHI	TCATGA	1 cut(s)	1036
BspLI	GGNNCC	1 cut(s)	329
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	2 cut(s)	644, 964
BspPI	GGATC	4 cut(s)	194, 723, 746, 785
BspT104I	TTCGAA	1 cut(s)	445
BsrDI	GCAATG	2 cut(s)	126, 939
BsrI	ACTGG	1 cut(s)	986
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
BssSI	CACGAG	2 cut(s)	549, 968
BssT1I	CCWWGG	1 cut(s)	854
Bst2BI	CACGAG	2 cut(s)	549, 968
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	671, 747
BstAPI	GCANNNNNTGC	1 cut(s)	625
BstBI	TTCGAA	1 cut(s)	445
BstC8I	GCNNGC	3 cut(s)	240, 663, 930
BstDEI	CTNAG	6 cut(s)	161, 323, 522, 725, 861, 1059
BstF5I	GGATG	2 cut(s)	108, 268
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	8 cut(s)	189, 259, 277, 460, 718, 754, 793, 1042
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	3 cut(s)	242, 309, 952
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	1005
BstX2I	RGATCY	1 cut(s)	790
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	859
BtsCI	GGATG	2 cut(s)	108, 268
BtsI	GCAGTG	1 cut(s)	841
BtsIMutI	CAGTG	2 cut(s)	743, 841
BveI	ACCTGC	2 cut(s)	644, 964
Cac8I	GCNNGC	3 cut(s)	240, 663, 930
CciI	TCATGA	1 cut(s)	1036
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	1004
CviAII	CATG	7 cut(s)	139, 239, 306, 802, 815, 949, 1037
CviQI	GTAC	1 cut(s)	1004
DdeI	CTNAG	6 cut(s)	161, 323, 522, 725, 861, 1059
DpnI	GATC	8 cut(s)	188, 258, 276, 459, 717, 753, 792, 1041
DpnII	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
DriI	GACNNNNNGTC	1 cut(s)	544
Eam1105I	GACNNNNNGTC	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	854
ErhI	CCWWGG	1 cut(s)	854
FaeI	CATG	7 cut(s)	142, 242, 309, 805, 818, 952, 1040
FatI	CATG	7 cut(s)	138, 238, 305, 801, 814, 948, 1036
FbaI	TGATCA	2 cut(s)	256, 1039
Fnu4HI	GCNGC	1 cut(s)	994
FokI	GGATG	2 cut(s)	95, 255
Fsp4HI	GCNGC	1 cut(s)	994
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	994
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	859
HapII	CCGG	2 cut(s)	174, 879
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	7 cut(s)	142, 242, 309, 805, 818, 952, 1040
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	1008
HinfI	GANTC	4 cut(s)	81, 515, 602, 982
HpaII	CCGG	2 cut(s)	174, 879
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	2 cut(s)	201, 538
Hpy188I	TCNGA	4 cut(s)	296, 397, 523, 795
Hpy188III	TCNNGA	5 cut(s)	272, 325, 609, 879, 1037
Hpy8I	GTNNAC	2 cut(s)	201, 538
Hpy99I	CGWCG	1 cut(s)	742
HpyAV	CCTTC	4 cut(s)	159, 177, 341, 1013
HpyCH4III	ACNGT	2 cut(s)	671, 747
HpyCH4IV	ACGT	1 cut(s)	1002
HpyCH4V	TGCA	3 cut(s)	386, 901, 1025
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	6 cut(s)	161, 323, 522, 725, 861, 1059
HpySE526I	ACGT	1 cut(s)	1002
Hsp92II	CATG	7 cut(s)	142, 242, 309, 805, 818, 952, 1040
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	878
Ksp22I	TGATCA	2 cut(s)	256, 1039
Kzo9I	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
LmnI	GCTCC	4 cut(s)	712, 729, 785, 1001
Lsp1109I	GCAGC	1 cut(s)	1005
LweI	GCATC	2 cut(s)	688, 903
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	1002
MaeIII	GTNAC	9 cut(s)	55, 116, 206, 347, 553, 581, 674, 741, 823
MalI	GATC	8 cut(s)	188, 258, 276, 459, 717, 753, 792, 1041
MboI	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
MboII	GAAGA	3 cut(s)	203, 467, 867
MflI	RGATCY	1 cut(s)	790
MluCI	AATT	5 cut(s)	246, 313, 420, 772, 1030
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	1023
MnlI	CCTC	8 cut(s)	283, 397, 604, 640, 861, 870, 927, 1068
MroI	TCCGGA	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	772
MseI	TTAA	5 cut(s)	12, 24, 87, 1065, 1075
MslI	CAYNNNNRTG	3 cut(s)	500, 819, 896
MspI	CCGG	2 cut(s)	174, 879
MspR9I	CCNGG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	1 cut(s)	625
NdeII	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
NlaIII	CATG	7 cut(s)	142, 242, 309, 805, 818, 952, 1040
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	4 cut(s)	116, 347, 674, 741
NspI	RCATGY	3 cut(s)	242, 309, 952
NspV	TTCGAA	1 cut(s)	445
PaeI	GCATGC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	1036
PaqCI	CACCTGC	1 cut(s)	964
PdmI	GAANNNNTTC	1 cut(s)	772
PfeI	GAWTC	3 cut(s)	515, 602, 982
PkrI	GCNGC	1 cut(s)	995
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	327
PspPPI	RGGWCCY	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	1 cut(s)	1005
RsaNI	GTAC	1 cut(s)	1004
RseI	CAYNNNNRTG	3 cut(s)	500, 819, 896
SaqAI	TTAA	5 cut(s)	12, 24, 87, 1065, 1075
SatI	GCNGC	1 cut(s)	994
Sau3AI	GATC	8 cut(s)	186, 256, 274, 457, 715, 751, 790, 1039
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	630
SfaNI	GCATC	2 cut(s)	688, 903
SfcI	CTRYAG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	445
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	3 cut(s)	500, 819, 896
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	5 cut(s)	246, 313, 420, 772, 1030
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	2 cut(s)	671, 747
TaiI	ACGT	1 cut(s)	1005
TaqI	TCGA	2 cut(s)	189, 445
TasI	AATT	5 cut(s)	246, 313, 420, 772, 1030
TfiI	GAWTC	3 cut(s)	515, 602, 982
Tru1I	TTAA	5 cut(s)	12, 24, 87, 1065, 1075
Tru9I	TTAA	5 cut(s)	12, 24, 87, 1065, 1075
TscAI	CASTG	2 cut(s)	750, 841
TseFI	GTSAC	4 cut(s)	116, 347, 674, 741
TseI	GCWGC	1 cut(s)	993
Tsp45I	GTSAC	4 cut(s)	116, 347, 674, 741
TspDTI	ATGAA	2 cut(s)	594, 1032
TspRI	CASTG	2 cut(s)	750, 841
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	1 cut(s)	772
XceI	RCATGY	3 cut(s)	242, 309, 952
XmnI	GAANNNNTTC	1 cut(s)	772
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.