Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Reverse (-)

68144318 .. 68147931

Gene Structure 3614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG503400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGTCGTGTTAAGCTGGAGATTAAGAGAATAGAAAACAACACCAATCGGCAAGTTACATTCTCAAAGCGCAGAAATGGACTCATTAAAAAAGCCTATGAGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATCATGTTCTCTCCTTCTGGTCGTCTTAGCCACTTTTCCGGCAAAAGAAGGATTGAAGATGTGTTTACTCGTTACATCAATCTCCCAGACCAAGAAAGAGAGCATGCTATAATTTTCCCTGATCACAACAAACATCCTGATCTACAAAACAAAGAGTACTTGCTCAGGACCCTTCAACAACTTCGTAGTGATAATAATTTTGCTCTTCAACTAGCCAATCCTACTGCAGTTAGCTCTGAAATTGAGGAACTTCAACAGGAAATTGGTGGGCTACAACAACAGGTTCGAATGGCGGAAGATCAAATAAGGATATATGAGCCTGACCCACTAAAAATCACATCTATGGCAGAGCTTGAATCATCTGAGAAAAGTCTTGTGGACACCTTGTCGCGTGTTACGCAGAGAAAGGAATATTTGTTGAGTAACCAGCTATCTTCTTTTGATTCATCTGGAATACAGCAAATGTTGCCAGGTTCTTTTGAGAATGAGGTCGCAGGTTGGCTGGCTAACGGTGGTCACAACCACACCCAAATATACGATGCTTCTGCTCCTTTGGATCACCAACTTAGGAACTTGTCGTCGTCACTGTATGATCCTTTTTCACAAGGAACGAGTTCAAATGGTGGAGCAGATCCGAGTAGCATGGGAGAGTGTCATGTGAGTGTTACAAACGGCAGTGATGGAGAGCTTCCTCCTTGGCCTCAGCCATACACATCTTCCGGACACCATTCCACCCTTATGCAACCATCATTGATACCTCAATATCAGCAGGCAATGGTAAGCTCAAACATGCCAGAAATAATACCACACGAGCAGGTGGAGATTCCAGTTAGCAGCTCCAACGTACAAGCTTACAATGAAGGTGCAGACAATTATCATGATCAAAACAATAAAGTTCCTCAGCTTAATGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

350

Amino Acids

39.32

Weight (kDa)

5.36

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	124 - 192	3.7e-06	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	940
Acc36I	ACCTGC	2 cut(s)	620, 940
AccII	CGCG	1 cut(s)	526
AccIII	TCCGGA	1 cut(s)	854
AciI	CCGC	1 cut(s)	428
AclWI	GGATC	3 cut(s)	699, 722, 761
AfaI	GTAC	2 cut(s)	293, 981
AgsI	TTSAA	6 cut(s)	191, 311, 344, 389, 491, 753
AhdI	GACNNNNNGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	604
AlwI	GGATC	3 cut(s)	699, 722, 761
Aor13HI	TCCGGA	1 cut(s)	854
AoxI	GGCC	1 cut(s)	833
ApeKI	GCWGC	1 cut(s)	969
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	686
AsuII	TTCGAA	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	303
BauI	CACGAG	1 cut(s)	944
BbvCI	CCTCAGC	2 cut(s)	837, 1035
BbvI	GCAGC	1 cut(s)	981
BccI	CCATC	3 cut(s)	116, 809, 889
BceAI	ACGGC	1 cut(s)	823
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	1 cut(s)	606
BclI	TGATCA	2 cut(s)	256, 1015
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	2 cut(s)	620, 940
BisI	GCNGC	1 cut(s)	970
BlsI	GCNGC	1 cut(s)	971
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	1 cut(s)	303
BmeRI	GACNNNNNGTC	1 cut(s)	520
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	1 cut(s)	664
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	3 cut(s)	299, 837, 1035
Bpu14I	TTCGAA	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	830
BsaWI	WCCGGW	1 cut(s)	854
Bse1I	ACTGG	1 cut(s)	962
Bse3DI	GCAATG	2 cut(s)	126, 915
BseAI	TCCGGA	1 cut(s)	854
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	830
BseGI	GGATG	2 cut(s)	108, 268
BseMI	GCAATG	2 cut(s)	126, 915
BseMII	CTCAG	4 cut(s)	313, 489, 851, 1049
BseNI	ACTGG	1 cut(s)	962
BseXI	GCAGC	1 cut(s)	981
BsgI	GTGCAG	1 cut(s)	1020
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	1 cut(s)	835
BsiSI	CCGG	2 cut(s)	174, 855
BsnI	GGCC	1 cut(s)	835
Bsp119I	TTCGAA	1 cut(s)	421
Bsp13I	TCCGGA	1 cut(s)	854
Bsp143I	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
BspACI	CCGC	1 cut(s)	428
BspANI	GGCC	1 cut(s)	835
BspCNI	CTCAG	4 cut(s)	312, 490, 850, 1048
BspEI	TCCGGA	1 cut(s)	854
BspFNI	CGCG	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	1 cut(s)	305
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	2 cut(s)	620, 940
BspPI	GGATC	3 cut(s)	699, 722, 761
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	126, 915
BsrI	ACTGG	1 cut(s)	962
BssECI	CCNNGG	1 cut(s)	830
BssMI	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
BssSI	CACGAG	1 cut(s)	944
BssT1I	CCWWGG	1 cut(s)	830
Bst2BI	CACGAG	1 cut(s)	944
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	647, 723
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	240, 639, 906
BstDEI	CTNAG	6 cut(s)	161, 299, 498, 701, 837, 1035
BstF5I	GGATG	2 cut(s)	108, 268
BstFNI	CGCG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	7 cut(s)	259, 277, 436, 694, 730, 769, 1018
BstMBI	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 601
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	2 cut(s)	242, 928
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	981
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BsuRI	GGCC	1 cut(s)	835
BtsCI	GGATG	2 cut(s)	108, 268
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	2 cut(s)	719, 817
BveI	ACCTGC	2 cut(s)	620, 940
Cac8I	GCNNGC	3 cut(s)	240, 639, 906
CciI	TCATGA	1 cut(s)	1012
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	292, 980
CviAII	CATG	6 cut(s)	139, 239, 778, 791, 925, 1013
CviQI	GTAC	2 cut(s)	292, 980
DdeI	CTNAG	6 cut(s)	161, 299, 498, 701, 837, 1035
DpnI	GATC	7 cut(s)	258, 276, 435, 693, 729, 768, 1017
DpnII	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
DriI	GACNNNNNGTC	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	830
Eco47I	GGWCC	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	830
FaeI	CATG	6 cut(s)	142, 242, 781, 794, 928, 1016
FatI	CATG	6 cut(s)	138, 238, 777, 790, 924, 1012
FbaI	TGATCA	2 cut(s)	256, 1015
Fnu4HI	GCNGC	1 cut(s)	970
FokI	GGATG	2 cut(s)	95, 255
Fsp4HI	GCNGC	1 cut(s)	970
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	970
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	835
HapII	CCGG	2 cut(s)	174, 855
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	6 cut(s)	142, 242, 781, 794, 928, 1016
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	984
HinfI	GANTC	4 cut(s)	81, 491, 578, 958
HpaII	CCGG	2 cut(s)	174, 855
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	201, 514
Hpy188I	TCNGA	3 cut(s)	373, 499, 771
Hpy188III	TCNNGA	5 cut(s)	272, 301, 585, 855, 1013
Hpy8I	GTNNAC	2 cut(s)	201, 514
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	4 cut(s)	159, 177, 317, 989
HpyCH4III	ACNGT	2 cut(s)	647, 723
HpyCH4IV	ACGT	1 cut(s)	978
HpyCH4V	TGCA	3 cut(s)	362, 877, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 601
HpyF3I	CTNAG	6 cut(s)	161, 299, 498, 701, 837, 1035
HpySE526I	ACGT	1 cut(s)	978
Hsp92II	CATG	6 cut(s)	142, 242, 781, 794, 928, 1016
HspAI	GCGC	1 cut(s)	70
Kpn2I	TCCGGA	1 cut(s)	854
Ksp22I	TGATCA	2 cut(s)	256, 1015
Kzo9I	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	688, 761, 977
Lsp1109I	GCAGC	1 cut(s)	981
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	978
MaeIII	GTNAC	8 cut(s)	55, 116, 206, 529, 557, 650, 717, 799
MalI	GATC	7 cut(s)	258, 276, 435, 693, 729, 768, 1017
MboI	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
MboII	GAAGA	5 cut(s)	203, 332, 443, 561, 843
MflI	RGATCY	1 cut(s)	766
MluCI	AATT	5 cut(s)	246, 331, 375, 396, 1006
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	999
MnlI	CCTC	6 cut(s)	373, 616, 837, 846, 903, 1044
MroI	TCCGGA	1 cut(s)	854
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	5 cut(s)	12, 24, 87, 1041, 1051
MslI	CAYNNNNRTG	3 cut(s)	476, 795, 872
MspI	CCGG	2 cut(s)	174, 855
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	2 cut(s)	532, 601
NdeII	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
NlaIII	CATG	6 cut(s)	142, 242, 781, 794, 928, 1016
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	3 cut(s)	116, 650, 717
NspI	RCATGY	2 cut(s)	242, 928
NspV	TTCGAA	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	1012
PaqCI	CACCTGC	1 cut(s)	940
PciSI	GCTCTTC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	3 cut(s)	491, 578, 958
PkrI	GCNGC	1 cut(s)	971
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	303
PspPPI	RGGWCCY	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	2 cut(s)	293, 981
RsaNI	GTAC	2 cut(s)	292, 980
RseI	CAYNNNNRTG	3 cut(s)	476, 795, 872
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	12, 24, 87, 1041, 1051
SatI	GCNGC	1 cut(s)	970
Sau3AI	GATC	7 cut(s)	256, 274, 433, 691, 727, 766, 1015
Sau96I	GGNCC	1 cut(s)	303
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	606
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	421
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	3 cut(s)	476, 795, 872
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	5 cut(s)	246, 331, 375, 396, 1006
SsiI	CCGC	1 cut(s)	428
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	2 cut(s)	647, 723
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	1 cut(s)	421
TasI	AATT	5 cut(s)	246, 331, 375, 396, 1006
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	491, 578, 958
Tru1I	TTAA	5 cut(s)	12, 24, 87, 1041, 1051
Tru9I	TTAA	5 cut(s)	12, 24, 87, 1041, 1051
TscAI	CASTG	2 cut(s)	726, 817
TseFI	GTSAC	3 cut(s)	116, 650, 717
TseI	GCWGC	1 cut(s)	969
Tsp45I	GTSAC	3 cut(s)	116, 650, 717
TspDTI	ATGAA	2 cut(s)	570, 1008
TspRI	CASTG	2 cut(s)	726, 817
VpaK11BI	GGWCC	1 cut(s)	303
XceI	RCATGY	2 cut(s)	242, 928
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.