Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

42095812 .. 42100257

Gene Structure 4446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G511300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGTCGTGTTAAGCTGGAGATAAAGAGAATAGAAAACACCACCAATCGACAAGTTACATTTTCAAAGCGTAGAAATGGACTCATTAAGAAAGCCTATGAGCTTTCCATCCTTTGTGACATTGACATTGCTCTTATCATGTTCTCTCCCTCCGGTCGTCTCAGCCATTTTTCCGGCAAGCGAAGGATTGAGGATGTATTCACCCGCTACATTAATCTTCCTGACCAAGAAAGAGAGCATGCTATAATTTTCCCTGATCACAACAAACATCCTGATCTTCAAAACAAAGAGGTCAGATACATGACATCTAGCAATTACTTGCTTAGGACTCTTCAGCAACTAAGAAGTGAAAATGATATTGCTCTACAACTTGCCAATCCCACGGCTGTTAGCTCTGAAATTGAGGAACTTCAACAGGAAATTGGAGGACTACAGCAACAACTTCAAATGGCCGAGGAGCAGATAAGGATATATGAGCCTGACCCATTAAAAATCACATCTATGGCGGAGTTTGAATCCTGCGAAAAAAGCCTTATGGACACATTGACGCGTGTTATGCAGAGAAAGGAATATTTGCTGAGTAATCATCTTTCTTCCTATGACTCATCTGGAATGCCCCAAGTGTTGCCAGGCTCCTTCGAGAATGAGGTTGCAGGTTGGTTGTCTAGCGGTGGCCACAACCAAGCCCAAATTTACGATGCATCTGCTCCCTTGGATCATCAACTTAGGAACTTGTCTTCGACACTGTATGATCCGTTTTCACAAGGAACAAGTTCAAATGCAGATCCAAGTAGCATGGGAGAGTGTCATGTGAGTGTCACAAATGCCAGTGATGGAGAGCTTCCACCATGGCCTCAGGCTTACACTAATTCCTCTGGGCACCCCTCCACCCTCATGCCCTCAGGCTTGTTGCCACAATTTCAGCATACAATGGTGGGCTCGAACATGCCAGAAATAATGCCACACGAGCAGGTGGAGATCCCAGTGGGCAGCCCCAATGTTCAAGCTTACAATGAAGGTGCAGAGTATCATGAAAACAAGGTCCCTCAGCTTAATGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

355

Amino Acids

39.84

Weight (kDa)

5.31

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	961
Acc36I	ACCTGC	2 cut(s)	644, 961
AccB1I	GGYRCC	1 cut(s)	879
AccII	CGCG	1 cut(s)	550
AciI	CCGC	3 cut(s)	205, 506, 669
AclWI	GGATC	4 cut(s)	723, 746, 779, 973
AcoI	YGGCCR	2 cut(s)	450, 673
AcsI	RAATTY	1 cut(s)	690
AcuI	CTGAAG	1 cut(s)	317
AflIII	ACRYGT	1 cut(s)	548
AgsI	TTSAA	7 cut(s)	66, 281, 413, 446, 515, 777, 1004
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	6 cut(s)	16, 103, 393, 841, 1007, 1051
AluI	AGCT	6 cut(s)	16, 103, 393, 841, 1007, 1051
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	4 cut(s)	723, 746, 779, 973
AoxI	GGCC	3 cut(s)	450, 673, 851
ApeKI	GCWGC	1 cut(s)	990
ApoI	RAATTY	1 cut(s)	690
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	772
AspS9I	GGNCC	1 cut(s)	1042
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	1042
AxyI	CCTNAGG	2 cut(s)	855, 901
BaeGI	GKGCMC	1 cut(s)	882
BalI	TGGCCA	1 cut(s)	675
BanI	GGYRCC	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	941
BauI	CACGAG	1 cut(s)	965
BbsI	GAAGAC	1 cut(s)	729
BbvCI	CCTCAGC	1 cut(s)	1047
BbvI	GCAGC	1 cut(s)	1002
BccI	CCATC	2 cut(s)	116, 827
BceAI	ACGGC	1 cut(s)	399
BcgI	CGANNNNNNTGC	2 cut(s)	686, 720
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	2 cut(s)	309, 666
BfmI	CTRYAG	1 cut(s)	431
BfuAI	ACCTGC	2 cut(s)	644, 961
BisI	GCNGC	1 cut(s)	991
BlsI	GCNGC	1 cut(s)	992
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	1 cut(s)	1042
BmgT120I	GGNCC	1 cut(s)	1042
BmiI	GGNNCC	3 cut(s)	634, 881, 1044
BmrFI	CCNGG	1 cut(s)	630
BmrI	ACTGGG	1 cut(s)	977
BmsI	GCATC	2 cut(s)	688, 710
BmuI	ACTGGG	1 cut(s)	977
BpiI	GAAGAC	1 cut(s)	729
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	2 cut(s)	323, 1047
BsaJI	CCNNGG	4 cut(s)	381, 453, 711, 848
BsaWI	WCCGGW	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	828, 983
Bse21I	CCTNAGG	2 cut(s)	855, 901
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	4 cut(s)	381, 453, 711, 848
BseGI	GGATG	3 cut(s)	108, 199, 268
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	5 cut(s)	175, 569, 869, 915, 1061
BseNI	ACTGG	2 cut(s)	828, 983
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	882
BseXI	GCAGC	1 cut(s)	1002
BsgI	GTGCAG	1 cut(s)	1041
Bsh1236I	CGCG	1 cut(s)	550
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	452, 675, 853
BshNI	GGYRCC	1 cut(s)	879
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	153, 174
BslFI	GGGAC	1 cut(s)	1028
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	1028
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	3 cut(s)	452, 675, 853
Bsp1286I	GDGCHC	2 cut(s)	882, 941
Bsp143I	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
Bsp19I	CCATGG	1 cut(s)	848
BspACI	CCGC	3 cut(s)	205, 506, 669
BspANI	GGCC	3 cut(s)	452, 675, 853
BspCNI	CTCAG	5 cut(s)	174, 570, 868, 914, 1060
BspFNI	CGCG	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	1030
BspLI	GGNNCC	3 cut(s)	634, 881, 1044
BspMI	ACCTGC	2 cut(s)	644, 961
BspPI	GGATC	4 cut(s)	723, 746, 779, 973
BspT107I	GGYRCC	1 cut(s)	879
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	828, 983
BssECI	CCNNGG	4 cut(s)	381, 453, 711, 848
BssMI	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
BssSI	CACGAG	1 cut(s)	965
BssT1I	CCWWGG	2 cut(s)	711, 848
Bst2BI	CACGAG	1 cut(s)	965
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	1 cut(s)	747
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	179, 240
BstDEI	CTNAG	8 cut(s)	161, 323, 341, 578, 725, 855, 901, 1047
BstDSI	CCRYGG	2 cut(s)	381, 848
BstF5I	GGATG	3 cut(s)	108, 199, 268
BstFNI	CGCG	1 cut(s)	550
BstKTI	GATC	6 cut(s)	259, 277, 718, 754, 787, 981
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	528, 556, 967
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	2 cut(s)	242, 949
BstSCI	CCNGG	1 cut(s)	628
BstSFI	CTRYAG	1 cut(s)	431
BstSLI	GKGCMC	1 cut(s)	882
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	1 cut(s)	1002
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	2 cut(s)	784, 978
BstYI	RGATCY	2 cut(s)	784, 978
Bsu36I	CCTNAGG	2 cut(s)	855, 901
BsuRI	GGCC	3 cut(s)	452, 675, 853
BtgI	CCRYGG	2 cut(s)	381, 848
BtsCI	GGATG	3 cut(s)	108, 199, 268
BtsIMutI	CAGTG	3 cut(s)	743, 835, 990
BveI	ACCTGC	2 cut(s)	644, 961
Cac8I	GCNNGC	2 cut(s)	179, 240
CciI	TCATGA	1 cut(s)	1030
Cfr13I	GGNCC	1 cut(s)	1042
CseI	GACGC	1 cut(s)	556
CviAII	CATG	9 cut(s)	139, 239, 301, 796, 809, 849, 895, 946, 1031
DdeI	CTNAG	8 cut(s)	161, 323, 341, 578, 725, 855, 901, 1047
DpnI	GATC	6 cut(s)	258, 276, 717, 753, 786, 980
DpnII	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
EaeI	YGGCCR	2 cut(s)	450, 673
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	2 cut(s)	711, 848
Eco24I	GRGCYC	1 cut(s)	941
Eco47I	GGWCC	1 cut(s)	1042
Eco57I	CTGAAG	1 cut(s)	317
Eco81I	CCTNAGG	2 cut(s)	855, 901
EcoO109I	RGGNCCY	1 cut(s)	1042
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	2 cut(s)	711, 848
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	941
ErhI	CCWWGG	2 cut(s)	711, 848
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	9 cut(s)	142, 242, 304, 799, 812, 852, 898, 949, 1034
FaqI	GGGAC	1 cut(s)	1028
FatI	CATG	9 cut(s)	138, 238, 300, 795, 808, 848, 894, 945, 1030
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	991
FokI	GGATG	3 cut(s)	95, 206, 255
FriOI	GRGCYC	1 cut(s)	941
Fsp4HI	GCNGC	1 cut(s)	991
FspBI	CTAG	2 cut(s)	309, 666
GluI	GCNGC	1 cut(s)	991
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	452, 675, 853
HapII	CCGG	2 cut(s)	153, 174
HgaI	GACGC	1 cut(s)	556
Hin1II	CATG	9 cut(s)	142, 242, 304, 799, 812, 852, 898, 949, 1034
HindIII	AAGCTT	1 cut(s)	1005
HinfI	GANTC	4 cut(s)	81, 328, 515, 602
HpaII	CCGG	2 cut(s)	153, 174
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	296, 397
Hpy188III	TCNNGA	5 cut(s)	221, 272, 609, 640, 1031
HpyAV	CCTTC	3 cut(s)	177, 646, 1010
HpyCH4III	ACNGT	1 cut(s)	747
HpyCH4V	TGCA	5 cut(s)	559, 653, 701, 782, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	528, 556, 967
HpyF3I	CTNAG	8 cut(s)	161, 323, 341, 578, 725, 855, 901, 1047
Hsp92II	CATG	9 cut(s)	142, 242, 304, 799, 812, 852, 898, 949, 1034
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
LmnI	GCTCC	3 cut(s)	457, 638, 712
Lsp1109I	GCAGC	1 cut(s)	1002
LweI	GCATC	2 cut(s)	688, 710
MaeI	CTAG	2 cut(s)	309, 666
MaeIII	GTNAC	3 cut(s)	55, 116, 817
MalI	GATC	6 cut(s)	258, 276, 717, 753, 786, 980
MboI	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
MboII	GAAGA	5 cut(s)	209, 269, 323, 585, 729
MflI	RGATCY	2 cut(s)	784, 978
MhlI	GDGCHC	2 cut(s)	882, 941
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	7 cut(s)	246, 313, 399, 420, 690, 868, 917
MluI	ACGCGT	1 cut(s)	548
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	3 cut(s)	75, 322, 596
Mox20I	TGGCCA	1 cut(s)	675
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	772
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	6 cut(s)	12, 87, 213, 488, 1053, 1063
MslI	CAYNNNNRTG	3 cut(s)	500, 813, 893
Msp20I	TGGCCA	1 cut(s)	675
MspI	CCGG	2 cut(s)	153, 174
MspR9I	CCNGG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	3 cut(s)	528, 556, 967
NcoI	CCATGG	1 cut(s)	848
NdeII	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
NlaIII	CATG	9 cut(s)	142, 242, 304, 799, 812, 852, 898, 949, 1034
NlaIV	GGNNCC	3 cut(s)	634, 881, 1044
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	2 cut(s)	116, 817
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	2 cut(s)	242, 949
PaeI	GCATGC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	1030
PaqCI	CACCTGC	1 cut(s)	961
PctI	GAATGC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	992
PleI	GAGTC	3 cut(s)	75, 322, 596
PpsI	GAGTC	3 cut(s)	75, 322, 596
PpuMI	RGGWCCY	1 cut(s)	1042
PshBI	ATTAAT	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	1042
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	3 cut(s)	634, 881, 1044
PspPI	GGNCC	1 cut(s)	1042
PspPPI	RGGWCCY	1 cut(s)	1042
PsuI	RGATCY	2 cut(s)	784, 978
RseI	CAYNNNNRTG	3 cut(s)	500, 813, 893
SaqAI	TTAA	6 cut(s)	12, 87, 213, 488, 1053, 1063
SatI	GCNGC	1 cut(s)	991
Sau3AI	GATC	6 cut(s)	256, 274, 715, 751, 784, 978
Sau96I	GGNCC	1 cut(s)	1042
SchI	GAGTC	3 cut(s)	75, 322, 596
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	2 cut(s)	882, 941
SfaNI	GCATC	2 cut(s)	688, 710
SfcI	CTRYAG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	1042
SmiMI	CAYNNNNRTG	3 cut(s)	500, 813, 893
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	7 cut(s)	246, 313, 399, 420, 690, 868, 917
SsiI	CCGC	3 cut(s)	205, 506, 669
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	2 cut(s)	309, 666
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	2 cut(s)	711, 848
TaaI	ACNGT	1 cut(s)	747
TaqI	TCGA	4 cut(s)	49, 639, 740, 941
TasI	AATT	7 cut(s)	246, 313, 399, 420, 690, 868, 917
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	6 cut(s)	12, 87, 213, 488, 1053, 1063
Tru9I	TTAA	6 cut(s)	12, 87, 213, 488, 1053, 1063
TscAI	CASTG	3 cut(s)	750, 835, 990
TseFI	GTSAC	2 cut(s)	116, 817
TseI	GCWGC	1 cut(s)	990
Tsp45I	GTSAC	2 cut(s)	116, 817
TspDTI	ATGAA	2 cut(s)	1029, 1047
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	750, 835, 990
VpaK11BI	GGWCC	1 cut(s)	1042
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	690
XceI	RCATGY	2 cut(s)	242, 949
XmnI	GAANNNNTTC	1 cut(s)	772
XspI	CTAG	2 cut(s)	309, 666
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.