Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004939

Physical Location & Seq

Genomic Coordinates Forward (+)

14652965 .. 14656555

Gene Structure 3591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGTCGTGTTAAGCTGGAGATAAAGAGAATAGAAAACAACACTAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGACTCATTAAGAAAGCTTATGAGCTTTCCATCCTTTGTGATATTGACATTGCTCTTATCATGTTCTCTCCCTCCGGTCGCCTTAGCCATTTTTCCGGCAAAAGAAGGAATTTGTCATCGACACTGTATGATCCGTTTTCACAAGGACCAAGTTCGAATGCAGATCCAAGTACCATAGCACAGTGTCATGTGAGTGTCGCAAATGTTAGTGATGGAGAGCTTTCATCTTGGCCTCAGACTTACACTACTTCCTCAGGACACCCCTCCACCCTCATTTCTCCAACCTTGTTGCCACAATATCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010016 GO:0010152 GO:0010229 GO:0010468 GO:0010556 GO:0010622 GO:0010769 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043900 GO:0045595 GO:0048229 GO:0048281 GO:0048283 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048445 GO:0048467 GO:0048481 GO:0048482 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0051510 GO:0060255 GO:0060284 GO:0061458 GO:0065007 GO:0080090 GO:0080092 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

129

Amino Acids

14.16

Weight (kDa)

9.51

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.2e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77950 AT1G77950 AT1G77950 AT1G77950 AT1G77980
fragaria_vesca	FvH4_5g38110 FvH4_5g38110
malus_domestica	MD08G1177000.v1.1 MD08G1177100.v1.1 MD15G1362500.v1.1
prunus_persica	Prupe.1G511300_v2.0.a1
pyrus_communis	pycom08g15190 pycom15g32540
rosa_chinensis	RchiOBHm_Chr7g0240061 RchiOBHm_Chr7g0240131
rosa_laevigata	RLG00000000708
rosa_multiflora	Rmu_sc0009928.1_g000004
rosa_roxburghii	Rroxscaffold_3G00220460
rosa_rugosa	Rorug04G0113100 Rorug07G0332600 Rorug07G0332700 Rorug07G0332700 Rorug07G0332800 Rorug07G0332900
rosa_samantha	Rh7AG486000 Rh7BG459300 Rh7CG503400 Rh7DG471800
rosa_wichuraiana	Rw7G040760 Rw7G040830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	203, 236
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	1 cut(s)	250
AluBI	AGCT	4 cut(s)	16, 95, 103, 298
AluI	AGCT	4 cut(s)	16, 95, 103, 298
AlwI	GGATC	2 cut(s)	203, 236
AoxI	GGCC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	331
BccI	CCATC	2 cut(s)	116, 284
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	152
Bse21I	CCTNAGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	326, 345
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	310
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	153, 174
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	310
Bsp119I	TTCGAA	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	208, 241
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	325, 344
BspPI	GGATC	2 cut(s)	203, 236
BspT104I	TTCGAA	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	126
BssMI	GATC	2 cut(s)	208, 241
Bst4CI	ACNGT	2 cut(s)	204, 261
BstBI	TTCGAA	1 cut(s)	233
BstDEI	CTNAG	3 cut(s)	161, 312, 331
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	211, 244
BstMBI	GATC	2 cut(s)	208, 241
BstMCI	CGRYCG	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	2 cut(s)	200, 266
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	139, 266
CviJI	RGCY	6 cut(s)	16, 95, 103, 165, 298, 310
CviKI_1	RGCY	6 cut(s)	16, 95, 103, 165, 298, 310
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	3 cut(s)	161, 312, 331
DpnI	GATC	2 cut(s)	210, 243
DpnII	GATC	2 cut(s)	208, 241
Eco47I	GGWCC	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	142, 269
FaiI	YATR	5 cut(s)	99, 140, 207, 254, 267
FatI	CATG	2 cut(s)	138, 265
FokI	GGATG	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	2 cut(s)	153, 174
Hin1II	CATG	2 cut(s)	142, 269
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	2 cut(s)	153, 174
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	204, 261
HpyCH4V	TGCA	1 cut(s)	239
HpyF3I	CTNAG	3 cut(s)	161, 312, 331
Hsp92II	CATG	2 cut(s)	142, 269
Kzo9I	GATC	2 cut(s)	208, 241
LpnPI	CCDG	5 cut(s)	2, 166, 187, 318, 365
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	210, 243
MboI	GATC	2 cut(s)	208, 241
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	1 cut(s)	187
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	383
MnlI	CCTC	5 cut(s)	160, 321, 340, 352, 359
MseI	TTAA	2 cut(s)	12, 87
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	153, 174
Mva1269I	GAATGC	1 cut(s)	241
NdeII	GATC	2 cut(s)	208, 241
NlaIII	CATG	2 cut(s)	142, 269
NspV	TTCGAA	1 cut(s)	233
PctI	GAATGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	12, 87
Sau3AI	GATC	2 cut(s)	208, 241
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	75
SetI	ASST	6 cut(s)	18, 97, 105, 300, 365, 384
SfuI	TTCGAA	1 cut(s)	233
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	204, 261
TaqI	TCGA	3 cut(s)	49, 197, 233
TasI	AATT	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	12, 87
Tru9I	TTAA	2 cut(s)	12, 87
TscAI	CASTG	2 cut(s)	207, 266
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	2 cut(s)	207, 266
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.