Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004699

Physical Location & Seq

Genomic Coordinates Forward (+)

30270445 .. 30272668

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTAACACTGCCTGCTTTATCATTGTGGGCCGGAATGATATTCCCATCTATGAAGCTGAAGTTGGATCTGCTGCTAAAAGAGAAGATGCTGCACAGTTGCACCAATTTATATTACATGCAGCGTTAGATGTTGTCCAAGACCTAGCATGGACTACAAGTGCCATGTTCTTGAAGTCAGTGGACAGGTTTAACGATCTGGTTGTGTCAGTATATGTTACCGCAGGCCATACCCGACTGATGCTCCTTCATGATTCACGGAATGAGGACGGCATCAAGAGCTTCTTTCAAGAGGTGCATGAGCTTTATATAAAGATTCTTCTGAATCCCTTGTATCTTCCTGGTTCTCGGATAACGTCGTCACATTTTGACACCAAAGTACGTGCACTTGCAAGAAAGTACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sedlin_N

Protein Analysis

135

Amino Acids

15.26

Weight (kDa)

6.58

Isoelectric Point (pI)

20.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sedlin_N	PF04628	9 - 133	2.7e-44	Sedlin, N-terminal conserved region
Sybindin	PF04099	69 - 132	8.7e-06	Sybindin-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80500 AT1G80500
fragaria_vesca	FvH4_7g07440
malus_domestica	MD08G1243100.v1.1 MD08G1243200.v1.1 MD15G1436700.v1.1 MD15G1436800.v1.1
prunus_persica	Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1
pyrus_communis	pycom08g21090 pycom15g38540
rosa_chinensis	RchiOBHm_Chr1g0339521 RchiOBHm_Chr2g0154941
rosa_laevigata	RLG00000029234
rosa_multiflora	Rmu_sc0007322.1_g000001 Rmu_sc0010554.1_g000002
rosa_roxburghii	Rroxscaffold_160G00433650 Rroxscaffold_4G00313490 Rroxscaffold_4G00313500
rosa_rugosa	Rorug01G0141200.1 Rorug01G0141300.1 Rorug01G0141400.1 Rorug01G0141500.1
rosa_samantha	Rh1AG158700 Rh1CG148000
rosa_wichuraiana	Rw1G013230 Rw1G013240 Rw2G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	381, 401
AgsI	TTSAA	2 cut(s)	175, 290
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	3 cut(s)	59, 282, 304
AluI	AGCT	3 cut(s)	59, 282, 304
Alw21I	GWGCWC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	2 cut(s)	31, 226
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	3 cut(s)	74, 92, 122
AspS9I	GGNCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	61, 79, 134
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	342
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	404
BisI	GCNGC	3 cut(s)	75, 93, 123
BlsI	GCNGC	3 cut(s)	76, 94, 124
Bme1390I	CCNGG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	79, 231, 282
BsaAI	YACGTR	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
BseBI	CCWGG	1 cut(s)	342
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	3 cut(s)	61, 79, 134
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	33, 228
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	34
BsnI	GGCC	2 cut(s)	33, 228
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	68, 196
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	33, 228
BspHI	TCATGA	1 cut(s)	250
BspPI	GGATC	1 cut(s)	76
BssMI	GATC	2 cut(s)	68, 196
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	16, 226
BstKTI	GATC	2 cut(s)	71, 199
BstMBI	GATC	2 cut(s)	68, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 279
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	404
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	3 cut(s)	61, 79, 134
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	33, 228
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 186
Cac8I	GCNNGC	2 cut(s)	16, 226
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	380, 400
CviAII	CATG	5 cut(s)	119, 150, 166, 251, 299
CviJI	RGCY	6 cut(s)	5, 33, 59, 228, 282, 304
CviKI_1	RGCY	6 cut(s)	5, 33, 59, 228, 282, 304
CviQI	GTAC	2 cut(s)	380, 400
DpnI	GATC	2 cut(s)	70, 198
DpnII	GATC	2 cut(s)	68, 196
Eco57I	CTGAAG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	340
FaeI	CATG	5 cut(s)	122, 153, 169, 254, 302
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	5 cut(s)	118, 149, 165, 250, 298
Fnu4HI	GCNGC	3 cut(s)	75, 93, 123
Fsp4HI	GCNGC	3 cut(s)	75, 93, 123
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	3 cut(s)	75, 93, 123
HaeIII	GGCC	2 cut(s)	33, 228
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	5 cut(s)	122, 153, 169, 254, 302
HinfI	GANTC	3 cut(s)	254, 316, 325
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	184, 386
Hpy188I	TCNGA	2 cut(s)	324, 351
Hpy188III	TCNNGA	4 cut(s)	172, 251, 277, 290
Hpy8I	GTNNAC	2 cut(s)	184, 386
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	2 cut(s)	356, 382
HpyCH4V	TGCA	6 cut(s)	95, 103, 122, 298, 386, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 279
HpySE526I	ACGT	2 cut(s)	356, 382
Hsp92II	CATG	5 cut(s)	122, 153, 169, 254, 302
Kzo9I	GATC	2 cut(s)	68, 196
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	7 cut(s)	28, 47, 172, 185, 210, 327, 354
Lsp1109I	GCAGC	3 cut(s)	61, 79, 134
LweI	GCATC	3 cut(s)	79, 231, 282
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	2 cut(s)	356, 382
MaeIII	GTNAC	2 cut(s)	217, 360
MalI	GATC	2 cut(s)	70, 198
MboI	GATC	2 cut(s)	68, 196
MboII	GAAGA	3 cut(s)	98, 311, 329
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	259, 286
MseI	TTAA	1 cut(s)	192
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	11, 279
NdeII	GATC	2 cut(s)	68, 196
NlaIII	CATG	5 cut(s)	122, 153, 169, 254, 302
NmuCI	GTSAC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	122
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	3 cut(s)	254, 316, 325
PkrI	GCNGC	3 cut(s)	76, 94, 124
Ppu21I	YACGTR	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	2 cut(s)	381, 401
RsaNI	GTAC	2 cut(s)	380, 400
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	75, 93, 123
Sau3AI	GATC	2 cut(s)	68, 196
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	9 cut(s)	61, 147, 191, 284, 297, 306, 359, 385, 405
SfaNI	GCATC	3 cut(s)	79, 231, 282
SfcI	CTRYAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	2 cut(s)	359, 385
TasI	AATT	1 cut(s)	107
TfiI	GAWTC	3 cut(s)	254, 316, 325
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	16, 186
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	3 cut(s)	74, 92, 122
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	69, 239
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	16, 186
VneI	GTGCAC	1 cut(s)	384
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.