Rh1CG148000

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004699
Physical Location & Seq
Forward (+)
32587107 .. 32587810
704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG148000.1

Sequence Viewer

Length: 369 bp
ATGGCAACGACGGCATGTTTCATTATCGTGAGCAGAAACGACATCCCCATTTACGAAGCTGAAGTGGGATCTGCGGCCAAGAGAGAAGATGCTGCTCAGCTTCACCAGTTCATATTACATGCAGCTCTGGATATTGTTCAGGACCTTGCTTGGACTACCAGTGCCATGTATTTGAAAGCAGTAGACCGTTTTAATGATTTGGTGGTTTCCGCTTATGTTACAGCTGGTCATATCCTTCATCTTTTCGAATCTTCTGACTTGAGAATTATATATTTCCTGATTTGCCCAGTTGTTAAATATTTTGTCGCTGTTGTCGTGTGTTCTTCGACAAAAGTGCAGCATATACGAAAATGTCAGTCGATGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

122

Amino Acids

13.59

Weight (kDa)

6.49

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 9 - 78 3.6e-22 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AciI CCGC 2 cut(s) 74, 210
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 4 cut(s) 59, 100, 125, 224
AluI AGCT 4 cut(s) 59, 100, 125, 224
AlwI GGATC 1 cut(s) 76
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 92, 122, 337
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 246
AvaII GGWCC 1 cut(s) 142
BbvI GCAGC 3 cut(s) 79, 134, 349
BccI CCATC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BisI GCNGC 4 cut(s) 75, 93, 123, 338
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 4 cut(s) 76, 94, 124, 339
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 281
Bpu1102I GCTNAGC 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 280
Bse1I ACTGG 3 cut(s) 106, 159, 287
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 3 cut(s) 106, 159, 287
BseXI GCAGC 3 cut(s) 79, 134, 349
BsgI GTGCAG 1 cut(s) 356
BshFI GGCC 1 cut(s) 77
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 246
Bsp143I GATC 1 cut(s) 68
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 2 cut(s) 74, 210
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 246
BsrI ACTGG 3 cut(s) 106, 159, 287
BssMI GATC 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 2 cut(s) 18, 122
BstV1I GCAGC 3 cut(s) 79, 134, 349
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 3 cut(s) 15, 119, 166
CviJI RGCY 5 cut(s) 59, 77, 100, 125, 224
CviKI_1 RGCY 5 cut(s) 59, 77, 100, 125, 224
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 142
FaeI CATG 3 cut(s) 18, 122, 169
FatI CATG 3 cut(s) 14, 118, 165
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 75, 93, 123, 338
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 75, 93, 123, 338
GluI GCNGC 4 cut(s) 75, 93, 123, 338
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 3 cut(s) 18, 122, 169
HinfI GANTC 1 cut(s) 248
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 4 cut(s) 28, 128, 140, 277
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 122, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 3 cut(s) 18, 122, 169
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 7 cut(s) 113, 119, 125, 172, 210, 290, 300
Lsp1109I GCAGC 3 cut(s) 79, 134, 349
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 3 cut(s) 98, 243, 315
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 264
MseI TTAA 2 cut(s) 192, 294
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 68
NlaIII CATG 3 cut(s) 18, 122, 169
NspI RCATGY 2 cut(s) 18, 122
NspV TTCGAA 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 4 cut(s) 76, 94, 124, 339
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 2 cut(s) 192, 294
SatI GCNGC 4 cut(s) 75, 93, 123, 338
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 142
SetI ASST 5 cut(s) 61, 102, 127, 147, 226
SfaNI GCATC 1 cut(s) 79
SfuI TTCGAA 1 cut(s) 246
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 1 cut(s) 264
SsiI CCGC 2 cut(s) 74, 210
SspI AATATT 1 cut(s) 299
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 3 cut(s) 246, 326, 359
TasI AATT 1 cut(s) 264
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 192, 294
Tru9I TTAA 2 cut(s) 192, 294
TscAI CASTG 1 cut(s) 166
TseI GCWGC 3 cut(s) 92, 122, 337
TspDTI ATGAA 3 cut(s) 10, 100, 227
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 2 cut(s) 18, 122
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.