Rw2G039310

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004699
Physical Location & Seq
Forward (+)
64367055 .. 64367391
337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039310.1

Sequence Viewer

Length: 228 bp
ATGAGTTGCAAATGCTGTGGTGCTGCTTCAGTTGTGGAGAGGAGAAGGAGTAGTTCAGGTCAGACTAACCATGGTCTGAATGGAGAGATGCAAGTTACAGCTAGTCATACACGACTTATGCTGCTTTATGACTCCCGTAATGATGACGGGATTAAGAGCTTTTTCCAAGAGGTTCATGAGCTTTATATCAAGACTCTTCTTAATCCGACCTACTTGCCTGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

75

Amino Acids

8.38

Weight (kDa)

7.76

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 32 - 72 1.2e-11 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 12
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 3 cut(s) 101, 159, 181
AluI AGCT 3 cut(s) 101, 159, 181
ApeKI GCWGC 2 cut(s) 23, 121
BbvI GCAGC 2 cut(s) 10, 108
BcgI CGANNNNNNTGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 1 cut(s) 102
BisI GCNGC 2 cut(s) 24, 122
BlsI GCNGC 2 cut(s) 25, 123
Bme1390I CCNGG 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 10, 108
Bsp19I CCATGG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 70
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 10, 108
BtgI CCRYGG 1 cut(s) 70
CciI TCATGA 1 cut(s) 175
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 2 cut(s) 71, 176
CviJI RGCY 3 cut(s) 101, 159, 181
CviKI_1 RGCY 3 cut(s) 101, 159, 181
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 74, 179
FaiI YATR 7 cut(s) 72, 108, 119, 129, 177, 186, 226
FatI CATG 2 cut(s) 70, 175
Fnu4HI GCNGC 2 cut(s) 24, 122
Fsp4HI GCNGC 2 cut(s) 24, 122
FspBI CTAG 1 cut(s) 102
GluI GCNGC 2 cut(s) 24, 122
Hin1II CATG 2 cut(s) 74, 179
HinfI GANTC 2 cut(s) 131, 193
Hpy188I TCNGA 3 cut(s) 63, 78, 207
Hpy188III TCNNGA 2 cut(s) 176, 190
HpyAV CCTTC 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 9, 91
Hsp92II CATG 2 cut(s) 74, 179
LpnPI CCDG 2 cut(s) 42, 204
Lsp1109I GCAGC 2 cut(s) 10, 108
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 94
MboII GAAGA 1 cut(s) 188
MlyI GAGTC 2 cut(s) 125, 187
MnlI CCTC 2 cut(s) 33, 163
MseI TTAA 2 cut(s) 153, 201
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 70
NlaIII CATG 2 cut(s) 74, 179
PagI TCATGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 25, 123
PleI GAGTC 2 cut(s) 125, 187
PpsI GAGTC 2 cut(s) 125, 187
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 153, 201
SatI GCNGC 2 cut(s) 24, 122
SchI GAGTC 2 cut(s) 125, 187
ScrFI CCNGG 1 cut(s) 219
SetI ASST 6 cut(s) 61, 103, 161, 174, 183, 212
SfaNI GCATC 1 cut(s) 78
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 70
Tru1I TTAA 2 cut(s) 153, 201
Tru9I TTAA 2 cut(s) 153, 201
TseI GCWGC 2 cut(s) 23, 121
TspDTI ATGAA 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.