Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004699

Physical Location & Seq

Genomic Coordinates Forward (+)

20681168 .. 20683031

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCAACGACGGCGTGTTTCATCATCGTCAGCAGAAACGACATCCCTATTTACGAAGCTGAAGTCGGATCCGCGGCCAAAAGAGAAGATGCTGCACAGTTGCATCAGTTCATATTACATGCGGCTCTCGACATTGTTCAGGACCTTGCCTGGACTACCAGTGCCATGTACTTGAAAGCAATCGATCGCTTTAATGATTTGGTGGTTTCCGTCTATGTTACAGCTGACATGCACGACTTATGCTACTTCATGACTCTCGTAACGATGATGGCATCAAGAGCTTCTTCCAAGAGGTTCATGAGCTTTACATCAAAACTCTTCTCAATCCCCTCTACCTGCCTGGTTCACGAATTGCGTCATCACATTTTGATACAAAAGTTCGTGCTCTTGCACGAAAATATCTGTAGGGGCAGTGTATGCTGTGGGTACGCAAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sedlin_N

Protein Analysis

147

Amino Acids

16.4

Weight (kDa)

6.63

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80500 AT1G80500
fragaria_vesca	FvH4_7g07440
malus_domestica	MD08G1243100.v1.1 MD08G1243200.v1.1 MD15G1436700.v1.1 MD15G1436800.v1.1
prunus_persica	Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1
pyrus_communis	pycom08g21090 pycom15g38540
rosa_chinensis	RchiOBHm_Chr1g0339521 RchiOBHm_Chr2g0154941
rosa_laevigata	RLG00000029234
rosa_multiflora	Rmu_sc0007322.1_g000001 Rmu_sc0010554.1_g000002
rosa_roxburghii	Rroxscaffold_160G00433650 Rroxscaffold_4G00313490 Rroxscaffold_4G00313500
rosa_rugosa	Rorug01G0141200.1 Rorug01G0141300.1 Rorug01G0141400.1 Rorug01G0141500.1
rosa_samantha	Rh1AG158700 Rh1CG148000
rosa_wichuraiana	Rw1G013230 Rw1G013240 Rw2G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	344
AccII	CGCG	1 cut(s)	74
AciI	CCGC	3 cut(s)	72, 74, 122
AclWI	GGATC	2 cut(s)	63, 76
AcoI	YGGCCR	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	2 cut(s)	170, 428
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	149, 339
AluBI	AGCT	5 cut(s)	59, 224, 281, 303, 435
AluI	AGCT	5 cut(s)	59, 224, 281, 303, 435
Alw21I	GWGCWC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	63, 76
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BaeI	ACNNNNGTAYC	2 cut(s)	362, 395
BamHI	GGATCC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	151, 341
BfmI	CTRYAG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	3 cut(s)	75, 93, 123
BlsI	GCNGC	3 cut(s)	76, 94, 124
Bme1390I	CCNGG	2 cut(s)	151, 341
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	151, 341
BmsI	GCATC	3 cut(s)	79, 112, 281
Bsa29I	ATCGAT	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	151, 341
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	68, 184
BspACI	CCGC	3 cut(s)	72, 74, 122
BspANI	GGCC	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	74
BspHI	TCATGA	2 cut(s)	249, 297
BspLI	GGNNCC	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	63, 76
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	68, 184
Bst2UI	CCWGG	2 cut(s)	151, 341
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	433
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	2 cut(s)	71, 187
BstMBI	GATC	2 cut(s)	68, 184
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 278, 417
BstNI	CCWGG	2 cut(s)	151, 341
BstNSI	RCATGY	2 cut(s)	122, 232
BstSCI	CCNGG	2 cut(s)	149, 339
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	166, 418
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	2 cut(s)	249, 297
Cfr13I	GGNCC	1 cut(s)	142
Cfr42I	CCGCGG	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	169, 427
CviAII	CATG	5 cut(s)	119, 166, 229, 250, 298
CviJI	RGCY	7 cut(s)	59, 77, 125, 224, 281, 303, 435
CviKI_1	RGCY	7 cut(s)	59, 77, 125, 224, 281, 303, 435
CviQI	GTAC	2 cut(s)	169, 427
DpnI	GATC	2 cut(s)	70, 186
DpnII	GATC	2 cut(s)	68, 184
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	149, 339
FaeI	CATG	5 cut(s)	122, 169, 232, 253, 301
FaiI	YATR	9 cut(s)	113, 120, 167, 216, 230, 241, 251, 299, 418
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	5 cut(s)	118, 165, 228, 249, 297
Fnu4HI	GCNGC	3 cut(s)	75, 93, 123
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	75, 93, 123
GluI	GCNGC	3 cut(s)	75, 93, 123
HaeIII	GGCC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	344
Hin1II	CATG	5 cut(s)	122, 169, 232, 253, 301
HinfI	GANTC	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	7 cut(s)	128, 140, 250, 276, 298, 347, 438
Hpy8I	GTNNAC	1 cut(s)	346
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	4 cut(s)	95, 103, 232, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 278, 417
Hsp92II	CATG	5 cut(s)	122, 169, 232, 253, 301
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	68, 184
LpnPI	CCDG	7 cut(s)	125, 136, 163, 172, 326, 349, 353
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	3 cut(s)	79, 112, 281
MaeIII	GTNAC	2 cut(s)	217, 259
MalI	GATC	2 cut(s)	70, 186
MboI	GATC	2 cut(s)	68, 184
MboII	GAAGA	3 cut(s)	98, 276, 310
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	285, 340
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	2 cut(s)	74, 224
MspR9I	CCNGG	2 cut(s)	151, 341
MvaI	CCWGG	2 cut(s)	151, 341
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	11, 278, 417
NdeII	GATC	2 cut(s)	68, 184
NlaIII	CATG	5 cut(s)	122, 169, 232, 253, 301
NlaIV	GGNNCC	1 cut(s)	70
NspI	RCATGY	2 cut(s)	122, 232
PagI	TCATGA	2 cut(s)	249, 297
PkrI	GCNGC	3 cut(s)	76, 94, 124
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	149, 339
PspGI	CCWGG	2 cut(s)	149, 339
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	68
PvuI	CGATCG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	170, 428
RsaNI	GTAC	2 cut(s)	169, 427
SacII	CCGCGG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	3 cut(s)	75, 93, 123
Sau3AI	GATC	2 cut(s)	68, 184
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	2 cut(s)	151, 341
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	8 cut(s)	61, 147, 226, 283, 296, 305, 338, 437
SfaNI	GCATC	3 cut(s)	79, 112, 281
SfcI	CTRYAG	1 cut(s)	403
Sfr303I	CCGCGG	1 cut(s)	75
SgrBI	CCGCGG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	3 cut(s)	72, 74, 122
StyD4I	CCNGG	2 cut(s)	149, 339
TaaI	ACNGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	129, 183
TasI	AATT	1 cut(s)	350
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	77, 125
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	166, 418
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	4 cut(s)	10, 100, 238, 286
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	166, 418
VpaK11BI	GGWCC	1 cut(s)	142
XceI	RCATGY	2 cut(s)	122, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.