Rw1G013230

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004699
Physical Location & Seq
Reverse (-)
29528631 .. 29530958
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013230.1

Sequence Viewer

Length: 390 bp
ATGGGTTTCTTCAAAGTTCCTTGCTTCATTTTATACGGAGAAGATGCTGCTCAGCTTCACCAGTTCATATTACATGCAGCTCTGGATATTGTTCAGGACCTTGCTTGGACTACCAGTGCCATGTATTTGAAAGCAGTAGACCGCTTTAATGATTTGGTGGTTTCAGCCTATGTTACAGCTGAAACACGTACACGACTTATGCTGCTTCATGACTCCCGGAACGATGACGGGATTAAGAGCTTTTTCCAAGAGGTTCATGAGCTTAATTTATATCAAGGCAATTATTATTATTATTTTTTATTAAATCCTCCCGTTTTAGTGGGTTCGTCCCGATCTATCGGCACTTTGTGTGTCTTTTGTCCAGCTAATTCCCGATCAATTTGTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

129

Amino Acids

14.7

Weight (kDa)

5.69

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 16 - 89 2.9e-24 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 1 cut(s) 142
AdeI CACNNNGTG 1 cut(s) 348
AfaI GTAC 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 2 cut(s) 13, 130
AluBI AGCT 6 cut(s) 55, 80, 179, 240, 262, 365
AluI AGCT 6 cut(s) 55, 80, 179, 240, 262, 365
ApeKI GCWGC 3 cut(s) 47, 77, 202
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 34, 89, 189
BcnI CCSGG 1 cut(s) 217
BisI GCNGC 3 cut(s) 48, 78, 203
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 3 cut(s) 49, 79, 204
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 34
Bpu1102I GCTNAGC 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 61, 114
BseMII CTCAG 1 cut(s) 65
BseNI ACTGG 2 cut(s) 61, 114
BseXI GCAGC 3 cut(s) 34, 89, 189
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 332, 374
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 64
BspHI TCATGA 2 cut(s) 208, 256
BsrI ACTGG 2 cut(s) 61, 114
BssMI GATC 2 cut(s) 332, 374
BstBAI YACGTR 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 2 cut(s) 335, 377
BstMBI GATC 2 cut(s) 332, 374
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 34, 89, 189
BtsIMutI CAGTG 1 cut(s) 121
CciI TCATGA 2 cut(s) 208, 256
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 189
CviAII CATG 4 cut(s) 74, 121, 209, 257
CviJI RGCY 7 cut(s) 55, 80, 167, 179, 240, 262, 365
CviKI_1 RGCY 7 cut(s) 55, 80, 167, 179, 240, 262, 365
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 334, 376
DpnII GATC 2 cut(s) 332, 374
DraIII CACNNNGTG 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 97
FaeI CATG 4 cut(s) 77, 124, 212, 260
FaiI YATR 9 cut(s) 34, 68, 75, 122, 171, 200, 210, 258, 271
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 73, 120, 208, 256
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 48, 78, 203
Fsp4HI GCNGC 3 cut(s) 48, 78, 203
GluI GCNGC 3 cut(s) 48, 78, 203
HapII CCGG 1 cut(s) 217
Hin1II CATG 4 cut(s) 77, 124, 212, 260
HinfI GANTC 1 cut(s) 212
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 139, 191
Hpy188III TCNNGA 6 cut(s) 83, 95, 209, 257, 330, 372
Hpy8I GTNNAC 2 cut(s) 139, 191
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 4 cut(s) 77, 124, 212, 260
Kzo9I GATC 2 cut(s) 332, 374
LpnPI CCDG 6 cut(s) 68, 74, 80, 127, 230, 375
Lsp1109I GCAGC 3 cut(s) 34, 89, 189
LweI GCATC 1 cut(s) 34
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 334, 376
MboI GATC 2 cut(s) 332, 374
MboII GAAGA 1 cut(s) 53
MluCI AATT 4 cut(s) 265, 280, 367, 378
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 2 cut(s) 244, 318
MseI TTAA 5 cut(s) 147, 234, 264, 302, 388
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 217
NciI CCSGG 1 cut(s) 217
NdeII GATC 2 cut(s) 332, 374
NlaIII CATG 4 cut(s) 77, 124, 212, 260
NspI RCATGY 1 cut(s) 77
PagI TCATGA 2 cut(s) 208, 256
PfoI TCCNGGA 1 cut(s) 215
PkrI GCNGC 3 cut(s) 49, 79, 204
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
Ppu21I YACGTR 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 5 cut(s) 147, 234, 264, 302, 388
SatI GCNGC 3 cut(s) 48, 78, 203
Sau3AI GATC 2 cut(s) 332, 374
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 217
SetI ASST 9 cut(s) 57, 82, 102, 181, 190, 242, 255, 264, 367
SfaNI GCATC 1 cut(s) 34
SinI GGWCC 1 cut(s) 97
Sse9I AATT 4 cut(s) 265, 280, 367, 378
SsiI CCGC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 215
TaiI ACGT 1 cut(s) 190
TasI AATT 4 cut(s) 265, 280, 367, 378
Tru1I TTAA 5 cut(s) 147, 234, 264, 302, 388
Tru9I TTAA 5 cut(s) 147, 234, 264, 302, 388
TscAI CASTG 1 cut(s) 121
TseI GCWGC 3 cut(s) 47, 77, 202
TspDTI ATGAA 4 cut(s) 16, 55, 197, 245
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 97
XceI RCATGY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.