MD15G1436700.v1.1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004699
Physical Location & Seq
Forward (+)
53674968 .. 53676017
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1436700.v1.1.491

Sequence Viewer

Length: 348 bp
ATGGCGACGACGGCGTGTTTCATCATCGTCAGCAGAAGCGACATCCCTATTTACGAAGCTGAAGTCGGATCCGCCGCGAAAAGAGAAGATGCTGCTCAGTTGCATCAGTTCATATTACATGCCGCCCTCGATATTGTGCAGGACCTTGCCTGGACTACCAGTGCCATGTACTTGAAAGCAATCGATCGCTTTAATGATCTGGTGGTTTCCGTCTATGTTACGGCTGGTCATATCCTTCATATTTTCAGTTCAAATATTTGTGTCAACTCCACCTATCTTAGAATTGTATGTTTATTGATGATGTGTTATTTTCTGTGCCGGTTCTTGTGCAACTCCTTTGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

116

Amino Acids

12.97

Weight (kDa)

6.0

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 9 - 81 3.2e-21 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 3 cut(s) 72, 75, 123
AclWI GGATC 2 cut(s) 63, 76
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 175, 252
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwI GGATC 2 cut(s) 63, 76
ApeKI GCWGC 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 79
BceAI ACGGC 2 cut(s) 27, 237
BciT130I CCWGG 1 cut(s) 151
BisI GCNGC 3 cut(s) 75, 93, 123
BlsI GCNGC 3 cut(s) 76, 94, 124
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 79, 112
Bsa29I ATCGAT 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 1 cut(s) 319
Bsp143I GATC 3 cut(s) 68, 184, 196
BspACI CCGC 3 cut(s) 72, 75, 123
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 63, 76
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 318
BssMI GATC 3 cut(s) 68, 184, 196
Bst2UI CCWGG 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 96, 278
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 3 cut(s) 71, 187, 199
BstMBI GATC 3 cut(s) 68, 184, 196
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 149
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 119, 166
CviJI RGCY 2 cut(s) 59, 224
CviKI_1 RGCY 2 cut(s) 59, 224
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 96, 278
DpnI GATC 3 cut(s) 70, 186, 198
DpnII GATC 3 cut(s) 68, 184, 196
EciI GGCGGA 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 122, 169
FaiI YATR 7 cut(s) 113, 120, 167, 216, 231, 240, 289
FatI CATG 2 cut(s) 118, 165
Fnu4HI GCNGC 3 cut(s) 75, 93, 123
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 75, 93, 123
GluI GCNGC 3 cut(s) 75, 93, 123
HapII CCGG 1 cut(s) 319
Hin1II CATG 2 cut(s) 122, 169
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HpaII CCGG 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 103, 139, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 96, 278
Hsp92II CATG 2 cut(s) 122, 169
Kzo9I GATC 3 cut(s) 68, 184, 196
LpnPI CCDG 7 cut(s) 125, 136, 163, 172, 185, 210, 332
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 2 cut(s) 79, 112
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 70, 186, 198
MboI GATC 3 cut(s) 68, 184, 196
MboII GAAGA 1 cut(s) 98
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 282
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 1 cut(s) 137
MseI TTAA 2 cut(s) 192, 346
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 68, 184, 196
NlaIII CATG 2 cut(s) 122, 169
NlaIV GGNNCC 1 cut(s) 70
NspI RCATGY 1 cut(s) 122
PkrI GCNGC 3 cut(s) 76, 94, 124
Ple19I CGATCG 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PsuI RGATCY 1 cut(s) 68
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 192, 346
SatI GCNGC 3 cut(s) 75, 93, 123
Sau3AI GATC 3 cut(s) 68, 184, 196
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 151
SetI ASST 3 cut(s) 61, 147, 275
SfaNI GCATC 2 cut(s) 79, 112
SinI GGWCC 1 cut(s) 142
Sse9I AATT 1 cut(s) 282
SsiI CCGC 3 cut(s) 72, 75, 123
SspI AATATT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 149
TaqI TCGA 2 cut(s) 129, 183
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 168
TauI GCSGC 2 cut(s) 77, 125
Tru1I TTAA 2 cut(s) 192, 346
Tru9I TTAA 2 cut(s) 192, 346
TscAI CASTG 1 cut(s) 166
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 10, 100, 227
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.