FvH4_7g07440

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004699
Physical Location & Seq
Forward (+)
7360600 .. 7364998
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07440.t1

Sequence Viewer

Length: 528 bp
CAAAAACGACGACGGCATGCACAGGAGAGAAAGACGACATCTGGCTTCTGCACTGAAGAGAGGAGACTGAGACCGACCGAGATCAATAGCTCTTCAGAGACGAAGGGCTTGGTCGATTGGTTTATAGAGTCAGATTGGGGTAGAGCTAGCTCTGAAGAAGAAGAAGAAAGTAGAACAAAAATGGCGACGACGGCGTGTTTCATTATCGTGAGCAGAAACGACATCCCCATTTACGAAGCTGAAGTGGGATCTACGGCTAAGAGAGAAGATGCTGCTCAGCTTCACCAGTTCATATTACATGCAGCTCTGGATATTGTGCAGGACCTTGCTTGGACTACCAGTGCCATGTACTTGAAAGCAGTGGACCGCTTTAATGATTTGGTGGTTTCCGCATATGTTACTGCTGGTCATATCCTTCATCTTTTCGAATCTACTACTTCAGAATTATGTATTCCTGATTCTGCCAAGTTGTTGAATATTTTGTCACTGTTGTCGTGTGGTTTACTAGAATGTCAGTGTGTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

176

Amino Acids

19.64

Weight (kDa)

5.26

Isoelectric Point (pI)

69.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 69 - 138 1.1e-21 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 367, 390
AclWI GGATC 1 cut(s) 256
AcuI CTGAAG 5 cut(s) 75, 78, 174, 261, 423
AfaI GTAC 1 cut(s) 350
AgsI TTSAA 2 cut(s) 355, 475
AluBI AGCT 6 cut(s) 90, 146, 150, 239, 280, 305
AluI AGCT 6 cut(s) 90, 146, 150, 239, 280, 305
Alw26I GTCTC 3 cut(s) 58, 64, 92
AlwI GGATC 1 cut(s) 256
ApeKI GCWGC 2 cut(s) 272, 302
AspS9I GGNCC 2 cut(s) 322, 364
AsuHPI GGTGA 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 426
AsuNHI GCTAGC 1 cut(s) 146
AvaII GGWCC 2 cut(s) 322, 364
BbvI GCAGC 2 cut(s) 259, 314
BceAI ACGGC 3 cut(s) 29, 207, 270
BcoDI GTCTC 3 cut(s) 58, 64, 92
BfaI CTAG 2 cut(s) 147, 506
BisI GCNGC 2 cut(s) 273, 303
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 2 cut(s) 274, 304
Bme18I GGWCC 2 cut(s) 322, 364
BmgT120I GGNCC 2 cut(s) 322, 364
BmsI GCATC 1 cut(s) 259
BmtI GCTAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 426
BsaI GGTCTC 1 cut(s) 64
Bse1I ACTGG 2 cut(s) 286, 339
BseGI GGATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 59, 290
BseNI ACTGG 2 cut(s) 286, 339
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 2 cut(s) 259, 314
BsgI GTGCAG 2 cut(s) 34, 338
Bsh1285I CGRYCG 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 78
BsmAI GTCTC 3 cut(s) 58, 64, 92
BsmBI CGTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 81, 248
Bsp1720I GCTNAGC 1 cut(s) 276
BspACI CCGC 2 cut(s) 367, 390
BspCNI CTCAG 2 cut(s) 60, 289
BspOI GCTAGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 64
BsrI ACTGG 2 cut(s) 286, 339
BssMI GATC 2 cut(s) 81, 248
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 2 cut(s) 51, 97
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 18, 148
BstDEI CTNAG 3 cut(s) 68, 258, 276
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 2 cut(s) 84, 251
BstMAI GTCTC 3 cut(s) 58, 64, 92
BstMBI GATC 2 cut(s) 81, 248
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 20, 302
BstV1I GCAGC 2 cut(s) 259, 314
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 5 cut(s) 51, 346, 366, 485, 521
Cac8I GCNNGC 2 cut(s) 18, 148
Cfr13I GGNCC 2 cut(s) 322, 364
Csp6I GTAC 1 cut(s) 349
CviAII CATG 3 cut(s) 17, 299, 346
CviJI RGCY 9 cut(s) 45, 90, 108, 146, 150, 239, 257, 280, 305
CviKI_1 RGCY 9 cut(s) 45, 90, 108, 146, 150, 239, 257, 280, 305
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 68, 258, 276
DpnI GATC 2 cut(s) 83, 250
DpnII GATC 2 cut(s) 81, 248
Eam1104I CTCTTC 2 cut(s) 51, 97
EarI CTCTTC 2 cut(s) 51, 97
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 322, 364
Eco57I CTGAAG 5 cut(s) 75, 78, 174, 261, 423
EcoO109I RGGNCCY 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 92
FaeI CATG 3 cut(s) 20, 302, 349
FaiI YATR 9 cut(s) 18, 125, 293, 300, 347, 394, 396, 411, 448
FatI CATG 3 cut(s) 16, 298, 345
FauNDI CATATG 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 273, 303
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 273, 303
FspBI CTAG 2 cut(s) 147, 506
GluI GCNGC 2 cut(s) 273, 303
Hin1II CATG 3 cut(s) 20, 302, 349
HinfI GANTC 3 cut(s) 128, 428, 458
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 364, 503
Hpy188I TCNGA 4 cut(s) 97, 133, 154, 442
Hpy188III TCNNGA 3 cut(s) 208, 308, 455
Hpy8I GTNNAC 2 cut(s) 364, 503
Hpy99I CGWCG 4 cut(s) 12, 15, 190, 193
HpyAV CCTTC 2 cut(s) 97, 425
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 4 cut(s) 20, 51, 302, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 3 cut(s) 68, 258, 276
Hsp92II CATG 3 cut(s) 20, 302, 349
Kzo9I GATC 2 cut(s) 81, 248
LguI GCTCTTC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 8, 27, 293, 299, 305, 352, 390, 468
Lsp1109I GCAGC 2 cut(s) 259, 314
LweI GCATC 1 cut(s) 259
MaeI CTAG 2 cut(s) 147, 506
MaeIII GTNAC 2 cut(s) 397, 483
MalI GATC 2 cut(s) 83, 250
MboI GATC 2 cut(s) 81, 248
MboII GAAGA 7 cut(s) 68, 84, 167, 170, 173, 176, 278
MflI RGATCY 1 cut(s) 248
MluCI AATT 1 cut(s) 443
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 1 cut(s) 54
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeI CATATG 1 cut(s) 394
NdeII GATC 2 cut(s) 81, 248
NheI GCTAGC 1 cut(s) 146
NlaIII CATG 3 cut(s) 20, 302, 349
NmuCI GTSAC 1 cut(s) 483
NspI RCATGY 2 cut(s) 20, 302
NspV TTCGAA 1 cut(s) 426
PaeI GCATGC 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 428, 458
PkrI GCNGC 2 cut(s) 274, 304
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspPI GGNCC 2 cut(s) 322, 364
PspPPI RGGWCCY 1 cut(s) 322
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 273, 303
Sau3AI GATC 2 cut(s) 81, 248
Sau96I GGNCC 2 cut(s) 322, 364
SchI GAGTC 1 cut(s) 137
SetI ASST 7 cut(s) 92, 148, 152, 241, 282, 307, 327
SfaNI GCATC 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 426
SinI GGWCC 2 cut(s) 322, 364
SmiMI CAYNNNNRTG 1 cut(s) 206
SphI GCATGC 1 cut(s) 20
Sse9I AATT 1 cut(s) 443
SsiI CCGC 2 cut(s) 367, 390
SspI AATATT 1 cut(s) 478
SspMI CTAG 2 cut(s) 147, 506
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 2 cut(s) 114, 426
TaqII GACCGA 2 cut(s) 88, 92
TasI AATT 1 cut(s) 443
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 2 cut(s) 428, 458
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 5 cut(s) 58, 346, 366, 492, 521
TseFI GTSAC 1 cut(s) 483
TseI GCWGC 2 cut(s) 272, 302
Tsp45I GTSAC 1 cut(s) 483
TspDTI ATGAA 3 cut(s) 190, 280, 407
TspRI CASTG 5 cut(s) 58, 346, 366, 492, 521
VpaK11BI GGWCC 2 cut(s) 322, 364
XceI RCATGY 2 cut(s) 20, 302
XspI CTAG 2 cut(s) 147, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.