Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004699

Physical Location & Seq

Genomic Coordinates Forward (+)

38308704 .. 38318331

Gene Structure 9628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATCTTTAGCTTTACTTGTGCAGTTCATCATCTCAGTGACAGTCGTCGTCGGAGGCCATTTCGCTGGAAAAAAAAAAAGCAGAGAGAAAGCGAGGGAGATCAGATGGCGACGACGGCGTGTTTCATCATCGTCAGCAGAAACGACATCCCTATTTACGAAGCTGAAGTCGGATCCGCCGCCAAAAGAGAAGATGCTGCTCAGTTGCATCAGTTCATATTACATGCTGCTCTCGATATTGTGCAGGACCTTGCCTGGACTACCAGTGCCATGTACTTGAAGGCAATCGATCGCTTTAATGATCTGGTGGTTTCCGTCTATGTTACGGCTGACATACACGACTTATGCTACTTCATGACTCTCGTAACGATGATGGAATCAAGAGCTTCTTCCAAGAGGTTCATGAGCTTTATATCAAAACTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sedlin_N

Protein Analysis

143

Amino Acids

16.44

Weight (kDa)

8.84

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80500 AT1G80500
fragaria_vesca	FvH4_7g07440
malus_domestica	MD08G1243100.v1.1 MD08G1243200.v1.1 MD15G1436700.v1.1 MD15G1436800.v1.1
prunus_persica	Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1
pyrus_communis	pycom08g21090 pycom15g38540
rosa_chinensis	RchiOBHm_Chr1g0339521 RchiOBHm_Chr2g0154941
rosa_laevigata	RLG00000029234
rosa_multiflora	Rmu_sc0007322.1_g000001 Rmu_sc0010554.1_g000002
rosa_roxburghii	Rroxscaffold_160G00433650 Rroxscaffold_4G00313490 Rroxscaffold_4G00313500
rosa_rugosa	Rorug01G0141200.1 Rorug01G0141300.1 Rorug01G0141400.1 Rorug01G0141500.1
rosa_samantha	Rh1AG158700 Rh1CG148000
rosa_wichuraiana	Rw1G013230 Rw1G013240 Rw2G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	177, 180
AclWI	GGATC	2 cut(s)	168, 181
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	12, 164, 386, 408
AluI	AGCT	4 cut(s)	12, 164, 386, 408
AlwI	GGATC	2 cut(s)	168, 181
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	2 cut(s)	197, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AspS9I	GGNCC	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	184, 214
BccI	CCATC	2 cut(s)	100, 367
BceAI	ACGGC	2 cut(s)	132, 342
BciT130I	CCWGG	1 cut(s)	256
BisI	GCNGC	3 cut(s)	180, 198, 228
BlsI	GCNGC	3 cut(s)	181, 199, 229
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	184, 217
BoxI	GACNNNNGTC	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	288
BseGI	GGATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	49, 215
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	2 cut(s)	184, 214
BsgI	GTGCAG	2 cut(s)	42, 263
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	58
BshVI	ATCGAT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	292
BsnI	GGCC	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	3, 100, 173, 289, 301
BspACI	CCGC	2 cut(s)	177, 180
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	48, 214
BspDI	ATCGAT	1 cut(s)	288
BspHI	TCATGA	2 cut(s)	354, 402
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	168, 181
BsrI	ACTGG	1 cut(s)	264
BssMI	GATC	5 cut(s)	3, 100, 173, 289, 301
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	35, 201
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	5 cut(s)	6, 103, 176, 292, 304
BstMBI	GATC	5 cut(s)	3, 100, 173, 289, 301
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	227
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	184, 214
BstX2I	RGATCY	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	58
BsuTUI	ATCGAT	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	43, 271
CciI	TCATGA	2 cut(s)	354, 402
Cfr13I	GGNCC	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	224, 271, 355, 403
CviJI	RGCY	6 cut(s)	12, 58, 164, 329, 386, 408
CviKI_1	RGCY	6 cut(s)	12, 58, 164, 329, 386, 408
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	35, 201
DpnI	GATC	5 cut(s)	5, 102, 175, 291, 303
DpnII	GATC	5 cut(s)	3, 100, 173, 289, 301
EciI	GGCGGA	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	254
FaeI	CATG	4 cut(s)	227, 274, 358, 406
FaiI	YATR	9 cut(s)	218, 225, 272, 321, 335, 346, 356, 404, 413
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FatI	CATG	4 cut(s)	223, 270, 354, 402
Fnu4HI	GCNGC	3 cut(s)	180, 198, 228
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	180, 198, 228
GluI	GCNGC	3 cut(s)	180, 198, 228
HaeIII	GGCC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	227, 274, 358, 406
HinfI	GANTC	2 cut(s)	358, 377
Hpy188I	TCNGA	4 cut(s)	54, 105, 173, 428
Hpy188III	TCNNGA	4 cut(s)	233, 355, 381, 403
Hpy99I	CGWCG	4 cut(s)	51, 54, 115, 118
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	3 cut(s)	23, 208, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	35, 201
Hsp92II	CATG	4 cut(s)	227, 274, 358, 406
Kzo9I	GATC	5 cut(s)	3, 100, 173, 289, 301
LpnPI	CCDG	6 cut(s)	52, 230, 241, 268, 277, 290
Lsp1109I	GCAGC	2 cut(s)	184, 214
LweI	GCATC	2 cut(s)	184, 217
MaeIII	GTNAC	3 cut(s)	38, 322, 364
MalI	GATC	5 cut(s)	5, 102, 175, 291, 303
MboI	GATC	5 cut(s)	3, 100, 173, 289, 301
MboII	GAAGA	3 cut(s)	203, 381, 415
MflI	RGATCY	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	2 cut(s)	32, 151
MnlI	CCTC	3 cut(s)	48, 88, 390
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	5 cut(s)	3, 100, 173, 289, 301
NlaIII	CATG	4 cut(s)	227, 274, 358, 406
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	227
PagI	TCATGA	2 cut(s)	354, 402
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	181, 199, 229
Ple19I	CGATCG	1 cut(s)	292
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PpuMI	RGGWCCY	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	247
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	3 cut(s)	180, 198, 228
Sau3AI	GATC	5 cut(s)	3, 100, 173, 289, 301
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	6 cut(s)	14, 166, 252, 388, 401, 410
SfaNI	GCATC	2 cut(s)	184, 217
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	36
SsiI	CCGC	2 cut(s)	177, 180
StyD4I	CCNGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	234, 288
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	43, 271
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	2 cut(s)	197, 227
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	5 cut(s)	17, 115, 205, 343, 391
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	43, 271
VpaK11BI	GGWCC	1 cut(s)	247
XceI	RCATGY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.