MD08G1243100.v1.1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0004699
Physical Location & Seq
Forward (+)
30865210 .. 30866276
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1243100.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCAGCGACGGCGTGTTTCATCATCGTCAGCAGAAACGACATCCCTATTTACGAAGCTGAAGTCGGATCCGCCGCCAAAAGAGAAGATGCTGCACAGTTGCATCAGTTCATATTACATGCGGCTCTCGACATTGTTCAGGACCTTGCCTGGACTACCAGTGCCATGTACTTGAAAGCAATCGATCGCTTTAACGATTTGGTGGTTTCCGTCTATGTTACTGCTGGTCATATCCTTTGTATTTCCAACTCAAATATACGTTTCACCTTCACCTATCTTAGAATTGTATGTTTTCACGGATGTGTTATTTTCTGCGCCAGTTCTTTAGCAACTCCGTCGTTTTTCAAATCAAGAAAGTATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

122

Amino Acids

13.5

Weight (kDa)

7.66

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 9 - 78 4.4e-21 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 72, 75, 122
AclWI GGATC 2 cut(s) 63, 76
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 175, 346
AjnI CCWGG 1 cut(s) 149
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwI GGATC 2 cut(s) 63, 76
ApeKI GCWGC 2 cut(s) 5, 92
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 256, 262
AvaII GGWCC 1 cut(s) 142
BamHI GGATCC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 17, 79
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 151
BisI GCNGC 4 cut(s) 6, 75, 93, 123
BlsI GCNGC 4 cut(s) 7, 76, 94, 124
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 79, 112
Bsa29I ATCGAT 1 cut(s) 183
Bse1I ACTGG 2 cut(s) 159, 318
BseBI CCWGG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 2 cut(s) 42, 305
BseNI ACTGG 2 cut(s) 159, 318
BseXI GCAGC 2 cut(s) 17, 79
BsgI GTGCAG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 187
Bsp143I GATC 2 cut(s) 68, 184
BspACI CCGC 3 cut(s) 72, 75, 122
BspDI ATCGAT 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 63, 76
BsrI ACTGG 2 cut(s) 159, 318
BssMI GATC 2 cut(s) 68, 184
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 42, 305
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 2 cut(s) 71, 187
BstMBI GATC 2 cut(s) 68, 184
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 17, 79
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 183
BtsCI GGATG 2 cut(s) 42, 305
BtsIMutI CAGTG 1 cut(s) 166
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 119, 166
CviJI RGCY 2 cut(s) 59, 125
CviKI_1 RGCY 2 cut(s) 59, 125
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 70, 186
DpnII GATC 2 cut(s) 68, 184
EciI GGCGGA 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 122, 169
FaiI YATR 7 cut(s) 113, 120, 167, 216, 231, 257, 289
FatI CATG 2 cut(s) 118, 165
Fnu4HI GCNGC 4 cut(s) 6, 75, 93, 123
FokI GGATG 2 cut(s) 29, 312
Fsp4HI GCNGC 4 cut(s) 6, 75, 93, 123
GlaI GCGC 1 cut(s) 316
GluI GCNGC 4 cut(s) 6, 75, 93, 123
HhaI GCGC 1 cut(s) 317
Hin1II CATG 2 cut(s) 122, 169
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HphI GGTGA 2 cut(s) 256, 262
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 128, 140, 351
Hpy99I CGWCG 2 cut(s) 13, 340
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 95, 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 2 cut(s) 122, 169
HspAI GCGC 1 cut(s) 315
Kzo9I GATC 2 cut(s) 68, 184
LpnPI CCDG 6 cut(s) 125, 136, 163, 172, 210, 331
Lsp1109I GCAGC 2 cut(s) 17, 79
LweI GCATC 2 cut(s) 79, 112
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 70, 186
MboI GATC 2 cut(s) 68, 184
MboII GAAGA 1 cut(s) 98
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 282
MmeI TCCRAC 2 cut(s) 46, 270
MseI TTAA 2 cut(s) 192, 364
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 68, 184
NlaIII CATG 2 cut(s) 122, 169
NlaIV GGNNCC 1 cut(s) 70
NspI RCATGY 1 cut(s) 122
OliI CACNNNNGTG 1 cut(s) 300
PkrI GCNGC 4 cut(s) 7, 76, 94, 124
Ple19I CGATCG 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PsuI RGATCY 1 cut(s) 68
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 192, 364
SatI GCNGC 4 cut(s) 6, 75, 93, 123
Sau3AI GATC 2 cut(s) 68, 184
Sau96I GGNCC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 151
SetI ASST 5 cut(s) 61, 147, 262, 269, 275
SfaNI GCATC 2 cut(s) 79, 112
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 1 cut(s) 282
SsiI CCGC 3 cut(s) 72, 75, 122
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 99
TaiI ACGT 1 cut(s) 262
TaqI TCGA 2 cut(s) 129, 183
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 168
TauI GCSGC 2 cut(s) 77, 125
Tru1I TTAA 2 cut(s) 192, 364
Tru9I TTAA 2 cut(s) 192, 364
TscAI CASTG 1 cut(s) 166
TseI GCWGC 2 cut(s) 5, 92
TspDTI ATGAA 2 cut(s) 10, 100
TspGWI ACGGA 3 cut(s) 199, 312, 324
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.