Rh1AG158700

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004699
Physical Location & Seq
Forward (+)
30088037 .. 30090438
2402 bp
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UTR
Exon/CDS
Intron
Rh1AG158700.1

Sequence Viewer

Length: 411 bp
ATGGCAACGACGGCATGTTTCATTATCGTGAGCAGAAACGACATCCCCATTTACGAAGCTGAAGTGGGATCTGCGGCCAAGAGAGAAGATGCTGCTCAGCTTCACCAGTTCATATTACATGCAGCTCTGGATATTGTTCAGGACCTTGCTTGGACTACCAGTGCCATGTATTTGAAAGCAGTAGACCGTTTTAATGATTTGGTGGTTTCCGCTTATGTTACAGCTGAAACACATACACGACTTATGCTGCTTCATGACTCCCGGAATGATGACGGGATTAAGAGCTTTTTCCAAGAGGTTCATGAGCTTTATATCAAGACTCTTCTTAATCCGACCTACTTGCCTGGTTCACGAATAACATCATCACATTTTGATACCAAAGTTCGTGCCCTTGCACGAAAGTATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

6.28

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 9 - 134 2.1e-43 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AciI CCGC 2 cut(s) 74, 210
AclWI GGATC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 6 cut(s) 59, 100, 125, 224, 285, 307
AluI AGCT 6 cut(s) 59, 100, 125, 224, 285, 307
AlwI GGATC 1 cut(s) 76
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 92, 122, 247
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 391
BaeI ACNNNNGTAYC 3 cut(s) 366, 386, 399
BbvI GCAGC 3 cut(s) 79, 134, 234
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 345
BcnI CCSGG 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 407
BisI GCNGC 4 cut(s) 75, 93, 123, 248
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 4 cut(s) 76, 94, 124, 249
Bme1390I CCNGG 2 cut(s) 262, 345
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 262, 345
BmsI GCATC 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 106, 159
BseBI CCWGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 106, 159
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 3 cut(s) 79, 134, 234
BshFI GGCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 262
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 1 cut(s) 68
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 2 cut(s) 74, 210
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 109
BspHI TCATGA 2 cut(s) 253, 301
BspPI GGATC 1 cut(s) 76
BsrI ACTGG 2 cut(s) 106, 159
BssMI GATC 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 2 cut(s) 18, 122
BstSCI CCNGG 2 cut(s) 260, 343
BstSFI CTRYAG 1 cut(s) 407
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 79, 134, 234
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 166
CciI TCATGA 2 cut(s) 253, 301
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 5 cut(s) 15, 119, 166, 254, 302
CviJI RGCY 7 cut(s) 59, 77, 100, 125, 224, 285, 307
CviKI_1 RGCY 7 cut(s) 59, 77, 100, 125, 224, 285, 307
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 5 cut(s) 18, 122, 169, 257, 305
FatI CATG 5 cut(s) 14, 118, 165, 253, 301
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 75, 93, 123, 248
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 75, 93, 123, 248
GluI GCNGC 4 cut(s) 75, 93, 123, 248
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 262
Hin1II CATG 5 cut(s) 18, 122, 169, 257, 305
HinfI GANTC 2 cut(s) 257, 319
HpaII CCGG 1 cut(s) 262
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 184, 350
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 7 cut(s) 28, 128, 140, 254, 302, 316, 351
Hpy8I GTNNAC 2 cut(s) 184, 350
Hpy99I CGWCG 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 122, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 5 cut(s) 18, 122, 169, 257, 305
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 7 cut(s) 113, 119, 125, 172, 275, 330, 357
Lsp1109I GCAGC 3 cut(s) 79, 134, 234
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 2 cut(s) 98, 314
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 391
MlyI GAGTC 2 cut(s) 251, 313
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 1 cut(s) 289
MseI TTAA 3 cut(s) 192, 279, 327
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 262, 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 262
NdeII GATC 1 cut(s) 68
NlaIII CATG 5 cut(s) 18, 122, 169, 257, 305
NspI RCATGY 2 cut(s) 18, 122
PagI TCATGA 2 cut(s) 253, 301
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 4 cut(s) 76, 94, 124, 249
PleI GAGTC 2 cut(s) 251, 313
PpsI GAGTC 2 cut(s) 251, 313
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 192, 279, 327
SatI GCNGC 4 cut(s) 75, 93, 123, 248
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 2 cut(s) 251, 313
ScrFI CCNGG 2 cut(s) 262, 345
SduI GDGCHC 1 cut(s) 391
SetI ASST 9 cut(s) 61, 102, 127, 147, 226, 287, 300, 309, 338
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 407
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 26
SsiI CCGC 2 cut(s) 74, 210
StyD4I CCNGG 2 cut(s) 260, 343
TaaI ACNGT 1 cut(s) 188
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 3 cut(s) 192, 279, 327
Tru9I TTAA 3 cut(s) 192, 279, 327
TscAI CASTG 1 cut(s) 166
TseI GCWGC 3 cut(s) 92, 122, 247
TspDTI ATGAA 4 cut(s) 10, 100, 242, 290
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 2 cut(s) 18, 122
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.