Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004699

Physical Location & Seq

Genomic Coordinates Forward (+)

47202104 .. 47207864

Gene Structure 5761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G580600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCAACCACAGCATGTTTCGTCATCGTCAGCAGAAACGACATCCCTATTTACGAAGCTGAAGTCGGATCCGCTGCCAAAAGAGAAGATGCTGCTCAGCTGCATCAGTTTATATTACATGCTGCTCTGGATATTGTTCAGGACCTTGCCTGGACTACTAGTGCCATGTACTTGAAAGCAATAGACCGCTTTAATGATCTGGTGGTTTCCGTCTATGTCACCGCTGACACACATACACGACTTATGCTACTTCATGACTCCCGTAATGATGATGGTATCAAGAGCTTCTTCCAAGAGGTTCATGAGCTCTATATCAAGACTCTACTTAATCCCCTCTACCTGCCTGGTTCCCGAATTACTTCATCGCATTTTGATACCAAAGTCCGTGCCCTTGCACGAAAATATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sedlin_N

Protein Analysis

137

Amino Acids

15.43

Weight (kDa)

6.27

Isoelectric Point (pI)

21.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80500 AT1G80500
fragaria_vesca	FvH4_7g07440
malus_domestica	MD08G1243100.v1.1 MD08G1243200.v1.1 MD15G1436700.v1.1 MD15G1436800.v1.1
prunus_persica	Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1
pyrus_communis	pycom08g21090 pycom15g38540
rosa_chinensis	RchiOBHm_Chr1g0339521 RchiOBHm_Chr2g0154941
rosa_laevigata	RLG00000029234
rosa_multiflora	Rmu_sc0007322.1_g000001 Rmu_sc0010554.1_g000002
rosa_roxburghii	Rroxscaffold_160G00433650 Rroxscaffold_4G00313490 Rroxscaffold_4G00313500
rosa_rugosa	Rorug01G0141200.1 Rorug01G0141300.1 Rorug01G0141400.1 Rorug01G0141500.1
rosa_samantha	Rh1AG158700 Rh1CG148000
rosa_wichuraiana	Rw1G013230 Rw1G013240 Rw2G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AciI	CCGC	3 cut(s)	72, 187, 222
AclWI	GGATC	2 cut(s)	63, 76
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	149, 343
AluBI	AGCT	4 cut(s)	59, 100, 285, 307
AluI	AGCT	4 cut(s)	59, 100, 285, 307
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	2 cut(s)	63, 76
ApeKI	GCWGC	4 cut(s)	74, 92, 100, 122
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
Asp700I	GAANNNNTTC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	391
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BamHI	GGATCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	4 cut(s)	61, 79, 87, 109
BccI	CCATC	1 cut(s)	266
BciT130I	CCWGG	2 cut(s)	151, 345
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	4 cut(s)	75, 93, 101, 123
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	4 cut(s)	76, 94, 102, 124
Bme1390I	CCNGG	2 cut(s)	151, 345
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	70, 349
BmrFI	CCNGG	2 cut(s)	151, 345
BmsI	GCATC	2 cut(s)	79, 112
Bpu1102I	GCTNAGC	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	151, 345
BseGI	GGATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	4 cut(s)	61, 79, 87, 109
BsiHKAI	GWGCWC	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	309, 391
Bsp143I	GATC	2 cut(s)	68, 196
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	3 cut(s)	72, 187, 222
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	2 cut(s)	253, 301
BspLI	GGNNCC	2 cut(s)	70, 349
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	2 cut(s)	63, 76
BssMI	GATC	2 cut(s)	68, 196
Bst2UI	CCWGG	2 cut(s)	151, 345
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	71, 199
BstMBI	GATC	2 cut(s)	68, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	151, 345
BstNSI	RCATGY	2 cut(s)	18, 122
BstSCI	CCNGG	2 cut(s)	149, 343
BstSFI	CTRYAG	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	4 cut(s)	61, 79, 87, 109
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	348
CciI	TCATGA	2 cut(s)	253, 301
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	5 cut(s)	15, 119, 166, 254, 302
CviJI	RGCY	4 cut(s)	59, 100, 285, 307
CviKI_1	RGCY	4 cut(s)	59, 100, 285, 307
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	70, 198
DpnII	GATC	2 cut(s)	68, 196
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	149, 343
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	5 cut(s)	18, 122, 169, 257, 305
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	5 cut(s)	14, 118, 165, 253, 301
Fnu4HI	GCNGC	4 cut(s)	75, 93, 101, 123
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	4 cut(s)	75, 93, 101, 123
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	4 cut(s)	75, 93, 101, 123
Hin1II	CATG	5 cut(s)	18, 122, 169, 257, 305
HinfI	GANTC	2 cut(s)	257, 319
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	7 cut(s)	128, 140, 254, 280, 302, 316, 351
HpyCH4V	TGCA	2 cut(s)	103, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	5 cut(s)	18, 122, 169, 257, 305
Kzo9I	GATC	2 cut(s)	68, 196
LpnPI	CCDG	8 cut(s)	113, 125, 136, 163, 185, 330, 353, 357
Lsp1109I	GCAGC	4 cut(s)	61, 79, 87, 109
LweI	GCATC	2 cut(s)	79, 112
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	70, 198
MboI	GATC	2 cut(s)	68, 196
MboII	GAAGA	2 cut(s)	98, 280
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	309, 391
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	2 cut(s)	251, 313
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	289, 344
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	2 cut(s)	192, 327
MspA1I	CMGCKG	3 cut(s)	74, 100, 224
MspR9I	CCNGG	2 cut(s)	151, 345
MvaI	CCWGG	2 cut(s)	151, 345
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	68, 196
NlaIII	CATG	5 cut(s)	18, 122, 169, 257, 305
NlaIV	GGNNCC	2 cut(s)	70, 349
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	2 cut(s)	18, 122
PagI	TCATGA	2 cut(s)	253, 301
PdmI	GAANNNNTTC	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	76, 94, 102, 124
PleI	GAGTC	2 cut(s)	251, 313
PpsI	GAGTC	2 cut(s)	251, 313
PpuMI	RGGWCCY	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	149, 343
PspGI	CCWGG	2 cut(s)	149, 343
PspN4I	GGNNCC	2 cut(s)	70, 349
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	192, 327
SatI	GCNGC	4 cut(s)	75, 93, 101, 123
Sau3AI	GATC	2 cut(s)	68, 196
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	2 cut(s)	251, 313
ScrFI	CCNGG	2 cut(s)	151, 345
SduI	GDGCHC	2 cut(s)	309, 391
SetI	ASST	7 cut(s)	61, 102, 147, 287, 300, 309, 342
SfaNI	GCATC	2 cut(s)	79, 112
SfcI	CTRYAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	142
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	3 cut(s)	72, 187, 222
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	149, 343
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	192, 327
Tru9I	TTAA	2 cut(s)	192, 327
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	74, 92, 100, 122
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	242, 290, 351
TspGWI	ACGGA	2 cut(s)	199, 374
VpaK11BI	GGWCC	1 cut(s)	142
XceI	RCATGY	2 cut(s)	18, 122
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.