MD08G1243200.v1.1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0004699
Physical Location & Seq
Forward (+)
30866278 .. 30867640
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1243200.v1.1.491

Sequence Viewer

Length: 168 bp
ATGCTACTTCATGACTCTCGTAACGATGATGGAATCAAGAGCTTCTTCCAAGAGGTTCACGAGCTTTACATCAAAACTCTTCTCAATCCCCTCTACCTGCCTGGTTCACGAATCGCGTCATCACATTTTGATACAAAAGTTCGTGCTCTTGCACGAAAATATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

56

Amino Acids

6.42

Weight (kDa)

9.22

Isoelectric Point (pI)

24.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 1 - 53 2.4e-16 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccII CGCG 1 cut(s) 116
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 42, 64
AluI AGCT 2 cut(s) 42, 64
Alw21I GWGCWC 1 cut(s) 148
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BauI CACGAG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 148
BspFNI CGCG 1 cut(s) 116
BspHI TCATGA 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 84
BstFNI CGCG 1 cut(s) 116
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 164
BstUI CGCG 1 cut(s) 116
BveI ACCTGC 1 cut(s) 105
CciI TCATGA 1 cut(s) 10
CseI GACGC 1 cut(s) 105
CviAII CATG 1 cut(s) 11
CviJI RGCY 2 cut(s) 42, 64
CviKI_1 RGCY 2 cut(s) 42, 64
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 14
FaiI YATR 1 cut(s) 12
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 1 cut(s) 10
FspEI CC 9 cut(s) 15, 38, 62, 87, 102, 103, 104, 110, 114
HgaI GACGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 14
HinfI GANTC 3 cut(s) 14, 33, 111
Hpy166II GTNNAC 2 cut(s) 58, 107
Hpy188III TCNNGA 4 cut(s) 11, 37, 59, 108
Hpy8I GTNNAC 2 cut(s) 58, 107
HpyCH4V TGCA 1 cut(s) 152
Hsp92II CATG 1 cut(s) 14
LpnPI CCDG 3 cut(s) 87, 110, 114
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 2 cut(s) 37, 71
MhlI GDGCHC 1 cut(s) 148
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 2 cut(s) 46, 101
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 116
NlaIII CATG 1 cut(s) 14
PagI TCATGA 1 cut(s) 10
PfeI GAWTC 2 cut(s) 33, 111
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 148
SetI ASST 4 cut(s) 44, 57, 66, 99
SfcI CTRYAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 100
TfiI GAWTC 2 cut(s) 33, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.