RLG00000029234

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004699
Physical Location & Seq
Reverse (-)
34977991 .. 34980990
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029234

Sequence Viewer

Length: 549 bp
ATGGCAACGACGGCGTGTTTCATTATTGTGAGCAGAAACGACATCCCCATTTACGAAGCTGAAGTGGGATCTGCGGCCAAGAGAGAAGATGCTGCTCAGCTTCACCAGTTCATATTACATGCAGCTCTGGATATTGTTCAGGACCTTGCTTGGACTACCAGTGCCATGTATTTGAAAGCAGTAGACCGCTTTAATGATTTGGTGGTTTCAGCCTATGTTACAGCTGAAACACATACACGACTTATGCTGCTTCATGACTCCCGGAATGATGACGGGATTAAGAGCTTTTTCCAAGAGGTTCATGAGCTTTATATCAAGACTCTTCTTAATCCGACCTACTTGCCTGGTTCACGAATAACATCATCACATTTTGATACCAAAGTTCGTGCCCTTGCACGAAAGACGAATATAAAAGAAAAGCCTTATGGGAAGGCCGAGACTCAATCAATTGATATAAAGCTTTCAATGACCGGAGAGATCCGCCTAGTCTCACCGAACCATCATGTGCTGAAACAAAACTTGAATGCTTATATGACTTTCGAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

183

Amino Acids

20.63

Weight (kDa)

6.75

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 9 - 134 5.7e-43 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 183
AciI CCGC 3 cut(s) 74, 187, 481
AclWI GGATC 2 cut(s) 76, 472
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 81
AgsI TTSAA 3 cut(s) 175, 465, 523
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 7 cut(s) 59, 100, 125, 224, 285, 307, 460
AluI AGCT 7 cut(s) 59, 100, 125, 224, 285, 307, 460
Alw26I GTCTC 2 cut(s) 431, 493
AlwI GGATC 2 cut(s) 76, 472
AoxI GGCC 2 cut(s) 75, 432
ApeKI GCWGC 3 cut(s) 92, 122, 247
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 2 cut(s) 95, 483
AsuII TTCGAA 1 cut(s) 540
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 391
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BbvI GCAGC 3 cut(s) 79, 134, 234
BccI CCATC 1 cut(s) 507
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 345
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 2 cut(s) 431, 493
BfaI CTAG 1 cut(s) 485
BisI GCNGC 4 cut(s) 75, 93, 123, 248
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 4 cut(s) 76, 94, 124, 249
Bme1390I CCNGG 2 cut(s) 262, 345
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 2 cut(s) 262, 345
BmsI GCATC 1 cut(s) 79
Bpu1102I GCTNAGC 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 470
Bse1I ACTGG 2 cut(s) 106, 159
BseBI CCWGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 106, 159
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 3 cut(s) 79, 134, 234
BshFI GGCC 2 cut(s) 77, 434
BsiSI CCGG 2 cut(s) 262, 471
BsmAI GTCTC 2 cut(s) 431, 493
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 2 cut(s) 77, 434
Bsp119I TTCGAA 1 cut(s) 540
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 68, 477
Bsp1720I GCTNAGC 1 cut(s) 96
BspACI CCGC 3 cut(s) 74, 187, 481
BspANI GGCC 2 cut(s) 77, 434
BspCNI CTCAG 1 cut(s) 109
BspHI TCATGA 2 cut(s) 253, 301
BspPI GGATC 2 cut(s) 76, 472
BspT104I TTCGAA 1 cut(s) 540
BsrI ACTGG 2 cut(s) 106, 159
BssMI GATC 2 cut(s) 68, 477
Bst2UI CCWGG 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 540
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 2 cut(s) 71, 480
BstMAI GTCTC 2 cut(s) 431, 493
BstMBI GATC 2 cut(s) 68, 477
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 260, 343
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 79, 134, 234
BstX2I RGATCY 2 cut(s) 68, 477
BstYI RGATCY 2 cut(s) 68, 477
BsuRI GGCC 2 cut(s) 77, 434
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 166
CciI TCATGA 2 cut(s) 253, 301
Cfr13I GGNCC 1 cut(s) 142
CviAII CATG 5 cut(s) 119, 166, 254, 302, 503
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 70, 479
DpnII GATC 2 cut(s) 68, 477
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 5 cut(s) 122, 169, 257, 305, 506
FatI CATG 5 cut(s) 118, 165, 253, 301, 502
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 75, 93, 123, 248
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 75, 93, 123, 248
FspBI CTAG 1 cut(s) 485
GluI GCNGC 4 cut(s) 75, 93, 123, 248
HaeIII GGCC 2 cut(s) 77, 434
HapII CCGG 2 cut(s) 262, 471
Hin1II CATG 5 cut(s) 122, 169, 257, 305, 506
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 3 cut(s) 257, 319, 439
HpaII CCGG 2 cut(s) 262, 471
HphI GGTGA 2 cut(s) 95, 483
Hpy166II GTNNAC 2 cut(s) 184, 350
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 6 cut(s) 128, 140, 254, 302, 316, 351
Hpy8I GTNNAC 2 cut(s) 184, 350
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 122, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 5 cut(s) 122, 169, 257, 305, 506
Kzo9I GATC 2 cut(s) 68, 477
LpnPI CCDG 8 cut(s) 113, 119, 125, 172, 275, 330, 357, 484
Lsp1109I GCAGC 3 cut(s) 79, 134, 234
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 70, 479
MboI GATC 2 cut(s) 68, 477
MboII GAAGA 2 cut(s) 98, 314
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 68, 477
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 1 cut(s) 447
MlyI GAGTC 3 cut(s) 251, 313, 433
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 1 cut(s) 289
MseI TTAA 3 cut(s) 192, 279, 327
MslI CAYNNNNRTG 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 262, 471
MspR9I CCNGG 2 cut(s) 262, 345
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 262
NdeII GATC 2 cut(s) 68, 477
NlaIII CATG 5 cut(s) 122, 169, 257, 305, 506
NmeAIII GCCGAG 1 cut(s) 460
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 540
PagI TCATGA 2 cut(s) 253, 301
PctI GAATGC 1 cut(s) 529
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 4 cut(s) 76, 94, 124, 249
PleI GAGTC 3 cut(s) 251, 313, 433
PpsI GAGTC 3 cut(s) 251, 313, 433
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PsuI RGATCY 2 cut(s) 68, 477
PvuII CAGCTG 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 192, 279, 327
SatI GCNGC 4 cut(s) 75, 93, 123, 248
Sau3AI GATC 2 cut(s) 68, 477
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 3 cut(s) 251, 313, 433
ScrFI CCNGG 2 cut(s) 262, 345
SduI GDGCHC 1 cut(s) 391
SfaNI GCATC 1 cut(s) 79
SfuI TTCGAA 1 cut(s) 540
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 1 cut(s) 447
SsiI CCGC 3 cut(s) 74, 187, 481
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 260, 343
TaqI TCGA 1 cut(s) 540
TasI AATT 1 cut(s) 447
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 3 cut(s) 192, 279, 327
Tru9I TTAA 3 cut(s) 192, 279, 327
TscAI CASTG 1 cut(s) 166
TseI GCWGC 3 cut(s) 92, 122, 247
TspDTI ATGAA 4 cut(s) 10, 100, 242, 290
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.