Rroxscaffold_160G00433650

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0004699
Physical Location & Seq
Reverse (-)
29425 .. 31133
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433650.1

Sequence Viewer

Length: 198 bp
ATGCAAGTTACAGCTGGTCATACACGACTTATGCTGCTTTATGACTCTCGTAATGATGACGGGATTAAGAGCTTTTTCCAAGAGGTTCATGAGCTTTATATCAAGACTCTTCTTAATCCGACCTACTTGCCTGGTTCACGAATAACATCGTCACATTTTGATACCAAAGTTCGTGCCCTTGCACGAAAATATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

65

Amino Acids

7.56

Weight (kDa)

9.52

Isoelectric Point (pI)

20.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 3 - 63 2.3e-18 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 3 cut(s) 14, 72, 94
AluI AGCT 3 cut(s) 14, 72, 94
ApeKI GCWGC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 178
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BbvI GCAGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 178
BspHI TCATGA 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 194
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 21
CciI TCATGA 1 cut(s) 88
CviAII CATG 1 cut(s) 89
CviJI RGCY 3 cut(s) 14, 72, 94
CviKI_1 RGCY 3 cut(s) 14, 72, 94
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 92
FaiI YATR 5 cut(s) 21, 32, 42, 90, 99
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 92
HinfI GANTC 2 cut(s) 44, 106
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 89, 103, 138
Hpy8I GTNNAC 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 4, 182
Hsp92II CATG 1 cut(s) 92
LpnPI CCDG 2 cut(s) 117, 144
Lsp1109I GCAGC 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 7, 150
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 178
MlyI GAGTC 2 cut(s) 38, 100
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 76
MseI TTAA 2 cut(s) 66, 114
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
NlaIII CATG 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 150
PagI TCATGA 1 cut(s) 88
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 2 cut(s) 38, 100
PpsI GAGTC 2 cut(s) 38, 100
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 66, 114
SatI GCNGC 1 cut(s) 35
SchI GAGTC 2 cut(s) 38, 100
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 178
SetI ASST 5 cut(s) 16, 74, 87, 96, 125
SfcI CTRYAG 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 130
Tru1I TTAA 2 cut(s) 66, 114
Tru9I TTAA 2 cut(s) 66, 114
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.