Rroxscaffold_4G00313500

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004699
Physical Location & Seq
Forward (+)
36996625 .. 36997175
551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313500.1

Sequence Viewer

Length: 321 bp
ATGGATCTTAGCTATTCGATTTACTTAGCCAATTTTAGAGAAGATGCTGCTCGGCTTCACCAGTTCATATTACATGCAGCTTTGGATATTGTTCAGGACCTTGCTTGGACTACCAGTGCCATGTATTTGAAAGCAGTAGACCGCTTTAATGATTTGGTGGTTTCCGCCTATGTTACAGCTGGTCATATCCTTCATCTTTTCGAATCTACTGATTCGAGAATTATTTATTTCCTGATTCACCCTGTTGTTAAATATTTTGTCGCTGTTGTCTTGTGTGTTCTTCGACAAAAGTGCAGCATATACGAAAATTTCAGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

106

Amino Acids

12.28

Weight (kDa)

6.49

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 11 - 64 1.2e-16 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 2 cut(s) 142, 165
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 307
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 3 cut(s) 12, 80, 179
AluI AGCT 3 cut(s) 12, 80, 179
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 3 cut(s) 47, 77, 294
ApoI RAATTY 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 50, 230
AsuII TTCGAA 1 cut(s) 201
AvaII GGWCC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 34, 89, 306
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BisI GCNGC 3 cut(s) 48, 78, 295
BlsI GCNGC 3 cut(s) 49, 79, 296
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 61, 114
BseNI ACTGG 2 cut(s) 61, 114
BseXI GCAGC 3 cut(s) 34, 89, 306
BsgI GTGCAG 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 201
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 142, 165
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 201
BsrI ACTGG 2 cut(s) 61, 114
BssMI GATC 1 cut(s) 4
BstBI TTCGAA 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 8, 25
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNSI RCATGY 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 34, 89, 306
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsIMutI CAGTG 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 97
CviAII CATG 2 cut(s) 74, 121
CviJI RGCY 5 cut(s) 12, 29, 55, 80, 179
CviKI_1 RGCY 5 cut(s) 12, 29, 55, 80, 179
DdeI CTNAG 2 cut(s) 8, 25
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
EciI GGCGGA 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 97
FaeI CATG 2 cut(s) 77, 124
FaiI YATR 7 cut(s) 68, 75, 122, 171, 186, 299, 301
FatI CATG 2 cut(s) 73, 120
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 48, 78, 295
Fsp4HI GCNGC 3 cut(s) 48, 78, 295
GluI GCNGC 3 cut(s) 48, 78, 295
Hin1II CATG 2 cut(s) 77, 124
HinfI GANTC 3 cut(s) 203, 212, 235
HphI GGTGA 2 cut(s) 50, 230
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 95, 216, 232
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 77, 294
HpyF3I CTNAG 2 cut(s) 8, 25
Hsp92II CATG 2 cut(s) 77, 124
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 74, 80, 127, 165, 245, 255
Lsp1109I GCAGC 3 cut(s) 34, 89, 306
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 53, 272
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 31, 219, 307
MseI TTAA 2 cut(s) 147, 249
MspA1I CMGCKG 1 cut(s) 179
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 77, 124
NmeAIII GCCGAG 1 cut(s) 31
NspI RCATGY 1 cut(s) 77
NspV TTCGAA 1 cut(s) 201
PfeI GAWTC 3 cut(s) 203, 212, 235
PkrI GCNGC 3 cut(s) 49, 79, 296
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 147, 249
SatI GCNGC 3 cut(s) 48, 78, 295
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 97
SetI ASST 4 cut(s) 14, 82, 102, 181
SfaNI GCATC 1 cut(s) 34
SfuI TTCGAA 1 cut(s) 201
SinI GGWCC 1 cut(s) 97
Sse9I AATT 3 cut(s) 31, 219, 307
SsiI CCGC 2 cut(s) 142, 165
SspI AATATT 1 cut(s) 254
TaqI TCGA 5 cut(s) 17, 201, 215, 283, 316
TasI AATT 3 cut(s) 31, 219, 307
TfiI GAWTC 3 cut(s) 203, 212, 235
Tru1I TTAA 2 cut(s) 147, 249
Tru9I TTAA 2 cut(s) 147, 249
TscAI CASTG 1 cut(s) 121
TseI GCWGC 3 cut(s) 47, 77, 294
TspDTI ATGAA 2 cut(s) 55, 182
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 307
XceI RCATGY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.