MD15G1436800.v1.1

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004699
Physical Location & Seq
Forward (+)
53676019 .. 53678331
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1436800.v1.1.491

Sequence Viewer

Length: 168 bp
ATGCTACTTCATGACTCTCGTAACGATGATGGAATCAAGAGCTTCTTCCAAGAGGTTCATGAGCTTTATATCAAAACTCTTCTTAATCCCCTGTACCTGCCTGGTTCGCGAATTGCGTCATCACATTTTGATACAAAAGTCCGTGCCCTTGCACGAAAATACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sedlin_N

Protein Analysis

56

Amino Acids

6.42

Weight (kDa)

9.22

Isoelectric Point (pI)

24.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sedlin_N PF04628 1 - 53 2.4e-16 Sedlin, N-terminal conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccII CGCG 1 cut(s) 109
AfaI GTAC 1 cut(s) 95
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 42, 64
AluI AGCT 2 cut(s) 42, 64
BaeGI GKGCMC 1 cut(s) 148
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 102
BfaI CTAG 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 148
Bsp68I TCGCGA 1 cut(s) 109
BspFNI CGCG 1 cut(s) 109
BspHI TCATGA 2 cut(s) 10, 58
BspMI ACCTGC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 84
BstFNI CGCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 1 cut(s) 109
BtuMI TCGCGA 1 cut(s) 109
BveI ACCTGC 1 cut(s) 105
CciI TCATGA 2 cut(s) 10, 58
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 11, 59
CviJI RGCY 2 cut(s) 42, 64
CviKI_1 RGCY 2 cut(s) 42, 64
CviQI GTAC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 14, 62
FaiI YATR 3 cut(s) 12, 60, 69
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 2 cut(s) 10, 58
FspBI CTAG 1 cut(s) 166
HgaI GACGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 14, 62
HinfI GANTC 2 cut(s) 14, 33
Hpy188III TCNNGA 4 cut(s) 11, 37, 59, 108
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 2 cut(s) 14, 62
LpnPI CCDG 4 cut(s) 87, 104, 110, 114
MaeI CTAG 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 2 cut(s) 37, 71
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 1 cut(s) 111
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 1 cut(s) 46
MseI TTAA 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 106
NlaIII CATG 2 cut(s) 14, 62
NruI TCGCGA 1 cut(s) 109
PagI TCATGA 2 cut(s) 10, 58
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PfeI GAWTC 1 cut(s) 33
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
RruI TCGCGA 1 cut(s) 109
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 84
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 44, 57, 66, 99, 165
Sse9I AATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 100
TasI AATT 1 cut(s) 111
TfiI GAWTC 1 cut(s) 33
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 131
XspI CTAG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.