Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010554.1

Orthogroup ID

OG0004699

Physical Location & Seq

Genomic Coordinates Forward (+)

8156 .. 10566

Gene Structure 2411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010554.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggcaacgacggcgtgtttcattatcgtgagcagaaacgacatccccatttacgaagctgaagtgggatctgcggcgaagagagaagatgctgctcagcttcaccagttcatattacatgcagctctggatattgttcaggaccttgcttggactaccagtgccatgtatttgaaagcagtagaccgctttaatgatttggtggtttcagcctatgttacagctgaaacacatacacgacttatgctgcttcatgactcccggaatgatgacgggattaagagctttttccaagaggttcatgagctttatatcaagactcttcttaatccgacctacttgcctggttcacgaataacatcatcacattttgataccaaagttcgtgcccttgcacgaaagtatctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sedlin_N

Protein Analysis

136

Amino Acids

15.4

Weight (kDa)

6.28

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80500 AT1G80500
fragaria_vesca	FvH4_7g07440
malus_domestica	MD08G1243100.v1.1 MD08G1243200.v1.1 MD15G1436700.v1.1 MD15G1436800.v1.1
prunus_persica	Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1 Prupe.1G580600_v2.0.a1
pyrus_communis	pycom08g21090 pycom15g38540
rosa_chinensis	RchiOBHm_Chr1g0339521 RchiOBHm_Chr2g0154941
rosa_laevigata	RLG00000029234
rosa_multiflora	Rmu_sc0007322.1_g000001 Rmu_sc0010554.1_g000002
rosa_roxburghii	Rroxscaffold_160G00433650 Rroxscaffold_4G00313490 Rroxscaffold_4G00313500
rosa_rugosa	Rorug01G0141200.1 Rorug01G0141300.1 Rorug01G0141400.1 Rorug01G0141500.1
rosa_samantha	Rh1AG158700 Rh1CG148000
rosa_wichuraiana	Rw1G013230 Rw1G013240 Rw2G039310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	74, 187
AclWI	GGATC	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	6 cut(s)	59, 100, 125, 224, 285, 307
AluI	AGCT	6 cut(s)	59, 100, 125, 224, 285, 307
AlwI	GGATC	1 cut(s)	76
ApeKI	GCWGC	3 cut(s)	92, 122, 247
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	391
BaeI	ACNNNNGTAYC	3 cut(s)	366, 386, 399
BbvI	GCAGC	3 cut(s)	79, 134, 234
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	407
BisI	GCNGC	4 cut(s)	75, 93, 123, 248
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	4 cut(s)	76, 94, 124, 249
Bme1390I	CCNGG	2 cut(s)	262, 345
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	262, 345
BmsI	GCATC	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	106, 159
BseBI	CCWGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	106, 159
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	3 cut(s)	79, 134, 234
BsiSI	CCGG	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	68
Bsp1720I	GCTNAGC	1 cut(s)	96
BspACI	CCGC	2 cut(s)	74, 187
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	2 cut(s)	253, 301
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	106, 159
BssMI	GATC	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	345
Bst6I	CTCTTC	2 cut(s)	74, 327
BstDEI	CTNAG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	260, 343
BstSFI	CTRYAG	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	3 cut(s)	79, 134, 234
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	166
CciI	TCATGA	2 cut(s)	253, 301
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	4 cut(s)	119, 166, 254, 302
CviJI	RGCY	7 cut(s)	59, 100, 125, 212, 224, 285, 307
CviKI_1	RGCY	7 cut(s)	59, 100, 125, 212, 224, 285, 307
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
Eam1104I	CTCTTC	2 cut(s)	74, 327
EarI	CTCTTC	2 cut(s)	74, 327
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	343
FaeI	CATG	4 cut(s)	122, 169, 257, 305
FaiI	YATR	9 cut(s)	113, 120, 167, 216, 234, 245, 255, 303, 312
FatI	CATG	4 cut(s)	118, 165, 253, 301
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	75, 93, 123, 248
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	75, 93, 123, 248
GluI	GCNGC	4 cut(s)	75, 93, 123, 248
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	4 cut(s)	122, 169, 257, 305
HinfI	GANTC	2 cut(s)	257, 319
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	184, 350
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	7 cut(s)	28, 128, 140, 254, 302, 316, 351
Hpy8I	GTNNAC	2 cut(s)	184, 350
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	122, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	122, 169, 257, 305
Kzo9I	GATC	1 cut(s)	68
LpnPI	CCDG	7 cut(s)	113, 119, 125, 172, 275, 330, 357
Lsp1109I	GCAGC	3 cut(s)	79, 134, 234
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	3 cut(s)	91, 98, 314
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	251, 313
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	1 cut(s)	289
MseI	TTAA	3 cut(s)	192, 279, 327
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	262, 345
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	122, 169, 257, 305
NspI	RCATGY	1 cut(s)	122
PagI	TCATGA	2 cut(s)	253, 301
PfoI	TCCNGGA	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	76, 94, 124, 249
PleI	GAGTC	2 cut(s)	251, 313
PpsI	GAGTC	2 cut(s)	251, 313
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	192, 279, 327
SatI	GCNGC	4 cut(s)	75, 93, 123, 248
Sau3AI	GATC	1 cut(s)	68
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	2 cut(s)	251, 313
ScrFI	CCNGG	2 cut(s)	262, 345
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	9 cut(s)	61, 102, 127, 147, 226, 287, 300, 309, 338
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	26
SsiI	CCGC	2 cut(s)	74, 187
StyD4I	CCNGG	2 cut(s)	260, 343
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	192, 279, 327
Tru9I	TTAA	3 cut(s)	192, 279, 327
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	3 cut(s)	92, 122, 247
TspDTI	ATGAA	4 cut(s)	10, 100, 242, 290
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	142
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.