AT1G80745

TFIIIC subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004376
Physical Location & Seq
Forward (+)
30347426 .. 30348482
1057 bp
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UTR
Exon/CDS
Intron
AT1G80745.1

Sequence Viewer

Length: 309 bp
ATGGAGGATGAACATGTTATGATTGATCTTGATGACGTTTCAAGGCACATTGACATTCCAGCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATAGATGGCAAAATGAAGCTGGTAGGAGAATATATAGCAACGATTGGTACATGCCTTGCTTTCTCTGACAAAGGTGATAACCAGACGCCACAGAAGAAGACAGTTGAACCTGTTGCCAAACTCCACAAGATTCTCAAGTTTAGGTTAGCACCATTAGACAACGAAGATGGAGTAACAAAAACAACCAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TFIIIC_sub6

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

4.83

Isoelectric Point (pI)

28.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TFIIIC_sub6 PF10419 2 - 88 5.9e-16 TFIIIC subunit triple barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 3 cut(s) 42, 100, 221
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 218
BccI CCATC 2 cut(s) 113, 275
BciVI GTATCC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 85
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 103
BseGI GGATG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 104
Bsp143I GATC 1 cut(s) 25
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 17, 168
BstV2I GAAGAC 1 cut(s) 218
BsuI GTATCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 13
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 162
CviAII CATG 2 cut(s) 14, 165
CviJI RGCY 1 cut(s) 133
CviKI_1 RGCY 1 cut(s) 133
CviQI GTAC 1 cut(s) 162
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
FaeI CATG 2 cut(s) 17, 168
FaiI YATR 7 cut(s) 15, 20, 75, 116, 147, 149, 166
FatI CATG 2 cut(s) 13, 164
FokI GGATG 1 cut(s) 20
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 2 cut(s) 17, 168
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 2 cut(s) 100, 244
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 2 cut(s) 17, 168
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 69, 72, 117, 119, 209, 237
LweI GCATC 1 cut(s) 55
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 286
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 220, 223, 290
MluCI AATT 1 cut(s) 301
MspI CCGG 1 cut(s) 104
NdeII GATC 1 cut(s) 25
NlaIII CATG 2 cut(s) 17, 168
NspI RCATGY 2 cut(s) 17, 168
PciI ACATGT 1 cut(s) 13
PfeI GAWTC 2 cut(s) 100, 244
PscI ACATGT 1 cut(s) 13
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 25
SetI ASST 6 cut(s) 39, 88, 135, 190, 226, 260
SfaNI GCATC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 301
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 39
TasI AATT 1 cut(s) 301
TfiI GAWTC 2 cut(s) 100, 244
TspDTI ATGAA 2 cut(s) 24, 143
XceI RCATGY 2 cut(s) 17, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.